Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QF117_RS18705 Genome accession   NZ_CP124614
Coordinates   2803414..2804454 (-) Length   346 a.a.
NCBI ID   WP_282387547.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2798414..2809454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS18675 (QF117_18675) - 2799289..2799897 (-) 609 WP_282387539.1 DUF1190 domain-containing protein -
  QF117_RS18680 (QF117_18680) - 2799912..2800325 (-) 414 WP_282387541.1 DUF350 domain-containing protein -
  QF117_RS18685 (QF117_18685) - 2800341..2800982 (-) 642 WP_282387542.1 YjfK family protein -
  QF117_RS18690 (QF117_18690) - 2800982..2802007 (-) 1026 WP_282387544.1 ion channel -
  QF117_RS18695 (QF117_18695) - 2802023..2802709 (-) 687 WP_282387545.1 PspA/IM30 family protein -
  QF117_RS18700 (QF117_18700) - 2802706..2803110 (-) 405 WP_282387546.1 DUF2170 family protein -
  QF117_RS18705 (QF117_18705) recA 2803414..2804454 (-) 1041 WP_282387547.1 recombinase RecA Machinery gene
  QF117_RS18710 (QF117_18710) pncC 2804656..2805141 (-) 486 WP_282387549.1 nicotinamide-nucleotide amidase -
  QF117_RS18715 (QF117_18715) mutS 2805246..2807807 (+) 2562 WP_282387550.1 DNA mismatch repair protein MutS -
  QF117_RS18720 (QF117_18720) rpoS 2807981..2808994 (-) 1014 WP_282387551.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37223.72 Da        Isoelectric Point: 4.9592

>NTDB_id=826785 QF117_RS18705 WP_282387547.1 2803414..2804454(-) (recA) [Vibrio sp. YMD68]
MDANKEKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKHKLVEKAGAWYSYNGDKIGQGKANAGKYLRDNPDAALAIDT
KLREMLLAPVELEKPTEDVEQLEEDL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=826785 QF117_RS18705 WP_282387547.1 2803414..2804454(-) (recA) [Vibrio sp. YMD68]
ATGGACGCAAATAAAGAAAAAGCACTAGCCGCAGCCCTAGGCCAGATTGAAAAGCAGTTTGGTAAAGGTTCTATCATGCG
TCTCGGTGACAACCGTACAATGGACGTAGAAACTATCTCAACAGGCTCACTTTCTTTGGACATCGCACTCGGTGCTGGTG
GCCTACCAATGGGGCGCATTGTTGAAGTCTACGGCCCTGAATCATCAGGTAAAACAACGTTAACGCTTGAGCTAATTGCA
GCCGCTCAACGTGTTGGAAAAACATGTGCCTTCGTTGATGCTGAGCATGCCTTAGATCCCATCTACGCACAGAAGCTAGG
CGTAGATATTGACGCTCTGTTAGTTTCTCAACCAGATACGGGTGAGCAAGCGCTAGAAATCTGTGATGCATTGGCTCGCT
CTGGTGCGATTGATGTTTTGGTTATCGACTCCGTAGCGGCTTTAACACCAAAAGCAGAGATTGAAGGTGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCTCGTATGCTTTCCCAAGCAATGCGTAAGCTAACGGGTAACCTGAAACAGTCGAACTGTAT
GGCTATCTTCATTAACCAGATTCGTATGAAAATTGGTGTTATGTTTGGTAACCCAGAAACCACAACAGGTGGTAACGCAC
TTAAGTTTTACGCATCGGTTCGTCTTGATATTCGTCGTACAGGTTCTATTAAAGAAGGCGATGAAATCGTGGGTAACGAA
ACTCGTATCAAGGTTGTTAAAAACAAGATTGCAGCACCATTTAAGCAGGCTGAAACTCAGATTCTTTACGGCAAAGGTTT
CAACCGTGAAGGTGAATTGATCGATTTAGGTGTGAAGCACAAACTTGTTGAGAAAGCGGGCGCTTGGTACAGCTACAATG
GTGACAAGATCGGTCAAGGTAAAGCAAACGCAGGTAAGTACCTTCGTGACAACCCAGATGCAGCCCTTGCCATCGATACC
AAATTACGAGAAATGTTGTTGGCTCCTGTTGAGTTAGAGAAACCAACAGAAGATGTCGAGCAATTAGAAGAAGACTTATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

86.416

100

0.864
  recA Vibrio cholerae O1 biovar El Tor strain E7946

86.416

100

0.864
  recA Pseudomonas stutzeri DSM 10701

72.807

98.844

0.72
  recA Acinetobacter baylyi ADP1

71.098

100

0.711
  recA Acinetobacter baumannii D1279779

74.006

94.509

0.699
  recA Glaesserella parasuis strain SC1401

65.903

100

0.665
  recA Neisseria gonorrhoeae MS11

66.372

97.977

0.65
  recA Neisseria gonorrhoeae MS11

66.372

97.977

0.65
  recA Neisseria gonorrhoeae strain FA1090

66.372

97.977

0.65
  recA Ralstonia pseudosolanacearum GMI1000

68.502

94.509

0.647
  recA Bacillus subtilis subsp. subtilis str. 168

62.112

93.064

0.578
  recA Helicobacter pylori 26695

57.971

99.711

0.578
  recA Helicobacter pylori strain NCTC11637

57.681

99.711

0.575
  recA Streptococcus mitis NCTC 12261

60.923

93.931

0.572
  recA Streptococcus mitis SK321

60.923

93.931

0.572
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.342

91.329

0.569
  recA Streptococcus pneumoniae TIGR4

60.615

93.931

0.569
  recA Streptococcus pneumoniae Rx1

60.615

93.931

0.569
  recA Streptococcus pneumoniae D39

60.615

93.931

0.569
  recA Streptococcus pneumoniae R6

60.615

93.931

0.569
  recA Streptococcus mutans UA159

60.681

93.353

0.566
  recA Streptococcus pyogenes NZ131

60.681

93.353

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.912

95.665

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.327

94.509

0.561
  recA Lactococcus lactis subsp. cremoris KW2

59.077

93.931

0.555
  recA Latilactobacillus sakei subsp. sakei 23K

60.188

92.197

0.555