Detailed information NTG0826787

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QF117_RS18720
• Genome accession: NZ_CP124614
• Coordinates: 2807981..2808994 (-)
• Length: 337 a.a.
• NCBI ID: WP_282387551.1
• Uniprot ID: -
• Organism: Vibrio sp. YMD68
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2802981..2813994

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QF117_RS18705 (QF117_18705)	recA	2803414..2804454 (-)	1041	WP_282387547.1	recombinase RecA	Machinery gene
QF117_RS18710 (QF117_18710)	pncC	2804656..2805141 (-)	486	WP_282387549.1	nicotinamide-nucleotide amidase	-
QF117_RS18715 (QF117_18715)	mutS	2805246..2807807 (+)	2562	WP_282387550.1	DNA mismatch repair protein MutS	-
QF117_RS18720 (QF117_18720)	rpoS	2807981..2808994 (-)	1014	WP_282387551.1	RNA polymerase sigma factor RpoS	Regulator
QF117_RS18725 (QF117_18725)	-	2809066..2809941 (-)	876	WP_282387553.1	peptidoglycan DD-metalloendopeptidase family protein	-
QF117_RS18730 (QF117_18730)	-	2809944..2810570 (-)	627	WP_282387554.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QF117_RS18735 (QF117_18735)	surE	2810567..2811328 (-)	762	WP_282389524.1	5'/3'-nucleotidase SurE	-
QF117_RS18740 (QF117_18740)	truD	2811341..2812381 (-)	1041	WP_282387556.1	tRNA pseudouridine(13) synthase TruD	-
QF117_RS18745 (QF117_18745)	ispF	2812482..2812955 (-)	474	WP_282387558.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QF117_RS18750 (QF117_18750)	ispD	2812946..2813671 (-)	726	WP_282387560.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QF117_RS18755 (QF117_18755)	ftsB	2813673..2813954 (-)	282	WP_282387562.1	cell division protein FtsB	-

Sequence

Protein

• Length: 337 a.a.
• Molecular weight: 38240.83 Da
• Isoelectric Point: 6.7658

>NTDB_id=826787 QF117_RS18720 WP_282387551.1 2807981..2808994(-) (rpoS) [Vibrio sp. YMD68]
MSISNAAVKMDELDLEITAKEIGKPKKQPAKTKTTAKAKTTVKAKTAATEEVEVSSKSLDATQLYLGEIGFSPLLTAEEE
VLFARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIER
ALMNQTRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVEDVSKMLRLNERVSSVDTPIGGDGEKALLD
IIPDIHNSDPEVSTQDNDIKASLVNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREV
LIKQGLNMENLFSVENE

Nucleotide

• Length: 1014 bp

>NTDB_id=826787 QF117_RS18720 WP_282387551.1 2807981..2808994(-) (rpoS) [Vibrio sp. YMD68]
ATGAGTATCAGCAATGCAGCAGTAAAAATGGATGAGTTGGATTTAGAGATAACCGCGAAGGAAATCGGTAAACCTAAAAA
ACAACCCGCCAAAACCAAAACAACAGCCAAAGCTAAAACAACAGTAAAAGCGAAGACCGCAGCCACTGAAGAAGTTGAAG
TGTCGAGTAAAAGCTTAGATGCGACACAACTTTACTTGGGTGAAATCGGTTTTTCTCCACTACTCACCGCAGAAGAAGAA
GTCCTTTTTGCTCGCCGAGCACTCCGAGGAGATGAAGCAGCACGTAAGCGCATGATTGAAAGTAATCTACGTCTTGTCGT
GAAAATATCTCGCCGATACAGCAATCGCGGCCTAGCATTACTCGATTTAATTGAAGAAGGTAACCTTGGATTGATTCGTG
CGGTCGAAAAATTTGACCCTGAAAGAGGCTTTCGCTTTTCAACCTATGCCACCTGGTGGATCCGACAAACAATAGAACGC
GCTTTGATGAATCAAACTCGAACTATTCGTTTACCTATCCATGTTGTCAAAGAACTGAATATTTATCTGCGCACGGCTAG
AGAGTTGTCTCAAAAGCTTGACCACGAACCGACTGCAGAAGAGATTGCTTCAAAGCTTGATAAACCTGTAGAAGATGTCA
GTAAAATGCTGCGCCTAAATGAACGCGTGAGTTCTGTTGATACCCCTATCGGTGGTGATGGCGAAAAAGCATTGCTGGAC
ATTATTCCTGATATTCATAATTCTGATCCCGAAGTTTCAACTCAAGATAATGATATAAAGGCTTCTTTAGTCAACTGGCT
TGATGAGCTAAACCCTAAGCAAAAAGAAGTGCTTGCGCGCCGATTTGGCCTTCTAGGGTATGAGCCATCAACGTTGGAAG
AAGTCGGACGTGAAATAAACCTGACTCGTGAAAGAGTTCGTCAGATACAAGTGGAAGGCCTACGTCGATTACGTGAAGTA
TTGATTAAGCAAGGGCTTAACATGGAAAATCTATTCAGCGTAGAAAATGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (178-251)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (60-93)

• Sigma-70, region 4 (Sigma70_r4) (266-319)

• Sigma-70 region 2 (Sigma70_r2) (98-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	80.597	99.407	0.801