Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QHF92_RS09270 Genome accession   NZ_CP123994
Coordinates   1869428..1870474 (+) Length   348 a.a.
NCBI ID   WP_060398650.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain M3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1864428..1875474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHF92_RS09240 (QHF92_09240) efpI 1864435..1865163 (+) 729 WP_060398649.1 EF-P-5 aminopentanone reductase -
  QHF92_RS09245 (QHF92_09245) - 1865244..1865501 (+) 258 WP_003238448.1 DUF3243 domain-containing protein -
  QHF92_RS09250 (QHF92_09250) - 1865631..1866422 (+) 792 WP_003220998.1 YmfK family protein -
  QHF92_RS09255 (QHF92_09255) rodZ 1866489..1867355 (+) 867 WP_232919113.1 cell shape determination protein RodZ -
  QHF92_RS09260 (QHF92_09260) pgsA 1867405..1867986 (+) 582 WP_003238444.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QHF92_RS09265 (QHF92_09265) cinA 1868005..1869255 (+) 1251 WP_003238442.1 competence/damage-inducible protein A Machinery gene
  QHF92_RS09270 (QHF92_09270) recA 1869428..1870474 (+) 1047 WP_060398650.1 recombinase RecA Machinery gene
  QHF92_RS09275 (QHF92_09275) - 1870642..1871820 (+) 1179 WP_060398651.1 serine hydrolase domain-containing protein -
  QHF92_RS09280 (QHF92_09280) rny 1872096..1873658 (+) 1563 WP_003221010.1 ribonuclease Y -
  QHF92_RS09285 (QHF92_09285) ymdB 1873728..1874522 (+) 795 WP_003238436.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  QHF92_RS09290 (QHF92_09290) spoVS 1874722..1874982 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38082.24 Da        Isoelectric Point: 4.7904

>NTDB_id=823722 QHF92_RS09270 WP_060398650.1 1869428..1870474(+) (recA) [Bacillus inaquosorum strain M3]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNHGVVQQQTEEAQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=823722 QHF92_RS09270 WP_060398650.1 1869428..1870474(+) (recA) [Bacillus inaquosorum strain M3]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGTAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACGGCACTGGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTTGCGCTCCATGCGATTGCTGAG
GTTCAGCAGCAAGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAGAAGCTCGGAGT
CAACATCGAAGAGCTCTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCGCTGGTTCGAAGCG
GTGCAGTTGACATTGTCGTAGTCGACTCTGTGGCAGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCA
CATGTCGGTTTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGAGCCATTAACAAATCGAAGACAATTGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGAAACCCGGAAACAACTCCTGGCGGCCGTGCGCTGA
AATTCTACTCTTCCGTGCGTCTCGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAATAAAACG
AAAATCAAAGTCGTAAAAAACAAGGTAGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATCTC
AAAAGAAGGCGAAATCATTGATCTTGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGTGAACATTACGGCTTGGATAATCACGGCGTAGTGCAGCAGCAAACTGAAGAGGCACAAGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

99.138

100

0.991
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

93.966

0.704
  recA Streptococcus pneumoniae D39

66.761

100

0.675
  recA Streptococcus pneumoniae R6

66.761

100

0.675
  recA Streptococcus pneumoniae TIGR4

66.761

100

0.675
  recA Streptococcus pneumoniae Rx1

66.761

100

0.675
  recA Streptococcus mutans UA159

66.189

100

0.664
  recA Streptococcus mitis NCTC 12261

66.86

98.851

0.661
  recA Streptococcus mitis SK321

68.485

94.828

0.649
  recA Streptococcus pyogenes NZ131

67.683

94.253

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.295

99.425

0.629
  recA Neisseria gonorrhoeae MS11

63.295

99.425

0.629
  recA Neisseria gonorrhoeae MS11

63.295

99.425

0.629
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Helicobacter pylori 26695

62.791

98.851

0.621
  recA Helicobacter pylori strain NCTC11637

62.791

98.851

0.621
  recA Ralstonia pseudosolanacearum GMI1000

64.438

94.54

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

98.276

0.609
  recA Vibrio cholerae strain A1552

60.756

98.851

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.756

98.851

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

93.966

0.601
  recA Glaesserella parasuis strain SC1401

60

99.138

0.595
  recA Acinetobacter baumannii D1279779

60.947

97.126

0.592
  recA Acinetobacter baylyi ADP1

59.71

99.138

0.592
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563