Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QHF92_RS09265 Genome accession   NZ_CP123994
Coordinates   1868005..1869255 (+) Length   416 a.a.
NCBI ID   WP_003238442.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain M3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1863005..1874255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QHF92_RS09235 (QHF92_09235) - 1863094..1864380 (+) 1287 WP_003238452.1 pitrilysin family protein -
  QHF92_RS09240 (QHF92_09240) efpI 1864435..1865163 (+) 729 WP_060398649.1 EF-P-5 aminopentanone reductase -
  QHF92_RS09245 (QHF92_09245) - 1865244..1865501 (+) 258 WP_003238448.1 DUF3243 domain-containing protein -
  QHF92_RS09250 (QHF92_09250) - 1865631..1866422 (+) 792 WP_003220998.1 YmfK family protein -
  QHF92_RS09255 (QHF92_09255) rodZ 1866489..1867355 (+) 867 WP_232919113.1 cell shape determination protein RodZ -
  QHF92_RS09260 (QHF92_09260) pgsA 1867405..1867986 (+) 582 WP_003238444.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QHF92_RS09265 (QHF92_09265) cinA 1868005..1869255 (+) 1251 WP_003238442.1 competence/damage-inducible protein A Machinery gene
  QHF92_RS09270 (QHF92_09270) recA 1869428..1870474 (+) 1047 WP_060398650.1 recombinase RecA Machinery gene
  QHF92_RS09275 (QHF92_09275) - 1870642..1871820 (+) 1179 WP_060398651.1 serine hydrolase domain-containing protein -
  QHF92_RS09280 (QHF92_09280) rny 1872096..1873658 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45512.88 Da        Isoelectric Point: 5.3834

>NTDB_id=823721 QHF92_RS09265 WP_003238442.1 1868005..1869255(+) (cinA) [Bacillus inaquosorum strain M3]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANALGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITISAAESFTGGLFSEWLTDLSGASKLFAGGVVCYTNDVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=823721 QHF92_RS09265 WP_003238442.1 1868005..1869255(+) (cinA) [Bacillus inaquosorum strain M3]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTCGGTTCAGAGCTGTTGCTTGGCCAGATCGCAAATACAAATGCTCA
ATTTATCAGTAAACAGCTCGCTGAGATCGGAGTTAACGTATTTTATCATACAGCAGTCGGAGATAATCCGGAGCGGCTGA
AGCAAGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGTCTCGGACCGACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAACGCGCTGGGACGTCCGCTCGTATTAAATGATGAAGCGTTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGCAAACAGGCGCTTGTGATCGAAGGATCTGACGTACTGGCGAATC
ACTTTGGAATGGCGCCGGGAATGCTCACAGAACATGAATCGCGCTTTTATATGCTTCTTCCTGGGCCGCCAAGCGAGTTG
CGTCCAATGTTTGAAAATGAAGCAAAGCCTCTTCTGCTGAAAAAGATGGGCTCAAATGAAAAAATTGTTTCAACTGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCCGATTTGGAAGACATTATTGATGCACAAACGAACCCGACAATCG
CTCCTTTGGCGGCTGACGGTGAGGTGACGCTGCGACTGACAGCCAAACATGCTGACGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCTGTTATCTTAGAACGAGTCGGTGAATTTTTCTATGGCTACGATGATACTTCCCTTGTAAAAGAGCT
TTCTAAAGCATGTAAGGAAAAAGGCATTACGATTTCCGCGGCGGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAAAATTATTTGCCGGCGGCGTCGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGC
GTCAAGAAGGAAACATTAGATCGTTTTGGCGCGGTCAGCAAGGAGTGTGCATCAGAGCTGGCAAAGGGTGTTCAAAAACT
CACTGGCAGCGACATCGGCATCAGCTTTACCGGTGTAGCAGGACCTGATACTCAAGAAGGGCATGAGCCTGGACATGTGT
TTATTGGCATTTCAGCAAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGAATCAGAAAACGA
GGCGCTAAATACGGCTGCCATTTAATCTTGAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

98.798

100

0.988
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375