Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QH639_RS23500 Genome accession   NZ_CP123966
Coordinates   4412032..4413096 (-) Length   354 a.a.
NCBI ID   WP_016992835.1    Uniprot ID   A0AAE8QKH8
Organism   Lysinibacillus sp.     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4407032..4418096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QH639_RS23480 (QH639_23480) - 4407501..4408256 (-) 756 WP_284705924.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -
  QH639_RS23485 (QH639_23485) - 4408297..4408998 (-) 702 WP_131521861.1 CpsD/CapB family tyrosine-protein kinase -
  QH639_RS23490 (QH639_23490) - 4408998..4409726 (-) 729 WP_131521862.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  QH639_RS23495 (QH639_23495) rny 4409955..4411514 (-) 1560 WP_004224930.1 ribonuclease Y -
  QH639_RS23500 (QH639_23500) recA 4412032..4413096 (-) 1065 WP_016992835.1 recombinase RecA Machinery gene
  QH639_RS23505 (QH639_23505) cinA 4413258..4414517 (-) 1260 WP_131521863.1 competence/damage-inducible protein A Machinery gene
  QH639_RS23510 (QH639_23510) pgsA 4414535..4415113 (-) 579 WP_004224936.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QH639_RS23515 (QH639_23515) - 4415161..4416090 (-) 930 WP_193767401.1 helix-turn-helix domain-containing protein -
  QH639_RS23520 (QH639_23520) - 4416107..4416892 (-) 786 WP_026023397.1 DUF3388 domain-containing protein -
  QH639_RS23525 (QH639_23525) - 4417109..4417366 (-) 258 WP_004224939.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38105.23 Da        Isoelectric Point: 4.6371

>NTDB_id=823339 QH639_RS23500 WP_016992835.1 4412032..4413096(-) (recA) [Lysinibacillus sp.]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQATGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENTAVLEDIANK
IRASYGIAASSYTIAAHDDEEEMDEELMLLLEEE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=823339 QH639_RS23500 WP_016992835.1 4412032..4413096(-) (recA) [Lysinibacillus sp.]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCTCTAAAGCAAATTGAAAAGAATTTTGGTAAAGGTTCCATTATGAAACT
CGGTGAAAAAACCGATTTAGAAATTGCGACATCTTCAAGTGGTTCACTTGCACTTGATGCTGCATTAGGAGTGGGTGGAT
ATCCACGTGGACGTATTATTGAAGTATACGGTCCAGAATCATCTGGTAAAACAACTGTTGCTCTACATGCCATTGCTGAA
GTACAAGCAACAGGTGGACAAGCAGCATTTATCGACGCTGAGCATGCATTAGACCCGATCTATGCGCAAAAATTAGGTGT
CAATATTGATGAGCTATTATTATCACAACCCGACACAGGTGAGCAAGCACTTGAAATCGCAGAAGCATTAGTGCGCAGTG
GTGCTATTGATATTATCGTCATTGACTCTGTTGCTGCCTTAGTGCCAAAAGCTGAAATTGAAGGGGATATGGGTGACTCT
CATGTCGGCTTACAAGCACGTCTAATGTCTCAAGCTTTACGTAAACTTTCTGGTGCGATTAATAAATCAAAAACGATTGC
TATTTTCATTAACCAAGTTCGTGAAAAAATTGGTGTCATGTTTGGTAATCCAGAAACAACACCAGGTGGACGTGCGCTTA
AATTCTACAGCTCTGTTCGTTTAGAAGTGCGTCGTGCAGAAGCTATTAAACAAGGTAATGATATTGTTGGTAACCGTACT
AAAATTAAGATTGTTAAAAATAAAGTAGCACCACCTTTCCGTACAGCTGAAGTAGATATTATGTATGGAGAAGGAATTTC
TAAAGAAGGCGAAACAGTCGATTTAGGCGTAGAATTAGACATTGTACAAAAAAGTGGTTCTTGGTATGCATATGGCGATG
AGCGCTTAGGTCAAGGACGAGAAAATGCTAAACAGTATTTAAAAGAAAATACTGCTGTCCTAGAAGACATAGCAAATAAA
ATCCGAGCTTCTTATGGTATTGCGGCTTCTTCTTATACAATTGCTGCCCATGATGATGAAGAAGAGATGGATGAAGAATT
AATGTTACTTCTGGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.239

92.373

0.797
  recA Latilactobacillus sakei subsp. sakei 23K

75.46

92.09

0.695
  recA Streptococcus mitis SK321

63.989

100

0.653
  recA Streptococcus mitis NCTC 12261

63.712

100

0.65
  recA Streptococcus mutans UA159

63.056

100

0.641
  recA Streptococcus pneumoniae R6

65.23

98.305

0.641
  recA Streptococcus pneumoniae Rx1

65.23

98.305

0.641
  recA Streptococcus pneumoniae D39

65.23

98.305

0.641
  recA Streptococcus pneumoniae TIGR4

65.23

98.305

0.641
  recA Lactococcus lactis subsp. cremoris KW2

66.667

93.22

0.621
  recA Streptococcus pyogenes NZ131

67.073

92.655

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.046

92.938

0.605
  recA Neisseria gonorrhoeae MS11

65.046

92.938

0.605
  recA Neisseria gonorrhoeae MS11

65.046

92.938

0.605
  recA Acinetobacter baylyi ADP1

61.808

96.893

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.471

96.045

0.59
  recA Helicobacter pylori strain NCTC11637

64.308

91.808

0.59
  recA Ralstonia pseudosolanacearum GMI1000

63.415

92.655

0.588
  recA Helicobacter pylori 26695

64

91.808

0.588
  recA Glaesserella parasuis strain SC1401

60.465

97.175

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.19

92.09

0.582
  recA Acinetobacter baumannii D1279779

60.472

95.763

0.579
  recA Vibrio cholerae strain A1552

63.438

90.395

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.438

90.395

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

91.243

0.573
  recA Pseudomonas stutzeri DSM 10701

62.617

90.678

0.568