Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QH639_RS23505 Genome accession   NZ_CP123966
Coordinates   4413258..4414517 (-) Length   419 a.a.
NCBI ID   WP_131521863.1    Uniprot ID   -
Organism   Lysinibacillus sp.     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4408258..4419517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QH639_RS23485 (QH639_23485) - 4408297..4408998 (-) 702 WP_131521861.1 CpsD/CapB family tyrosine-protein kinase -
  QH639_RS23490 (QH639_23490) - 4408998..4409726 (-) 729 WP_131521862.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  QH639_RS23495 (QH639_23495) rny 4409955..4411514 (-) 1560 WP_004224930.1 ribonuclease Y -
  QH639_RS23500 (QH639_23500) recA 4412032..4413096 (-) 1065 WP_016992835.1 recombinase RecA Machinery gene
  QH639_RS23505 (QH639_23505) cinA 4413258..4414517 (-) 1260 WP_131521863.1 competence/damage-inducible protein A Machinery gene
  QH639_RS23510 (QH639_23510) pgsA 4414535..4415113 (-) 579 WP_004224936.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QH639_RS23515 (QH639_23515) - 4415161..4416090 (-) 930 WP_193767401.1 helix-turn-helix domain-containing protein -
  QH639_RS23520 (QH639_23520) - 4416107..4416892 (-) 786 WP_026023397.1 DUF3388 domain-containing protein -
  QH639_RS23525 (QH639_23525) - 4417109..4417366 (-) 258 WP_004224939.1 DUF3243 domain-containing protein -
  QH639_RS23530 (QH639_23530) - 4417412..4418140 (-) 729 WP_131521865.1 SDR family oxidoreductase -
  QH639_RS23535 (QH639_23535) - 4418137..4419438 (-) 1302 WP_131521866.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45205.56 Da        Isoelectric Point: 4.7154

>NTDB_id=823340 QH639_RS23505 WP_131521863.1 4413258..4414517(-) (cinA) [Lysinibacillus sp.]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMIFTKNDRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQTILDAQTNPTVAPLASDGEVTLRVTAKAATEQQADQLIKAKV
AEIQALVGDYQYGVDDDSLASKTVEMLLDNELTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYAADAKVKQLGISQD
LIDTHGVVSAECAAAMASAVREKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYAKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=823340 QH639_RS23505 WP_131521863.1 4413258..4414517(-) (cinA) [Lysinibacillus sp.]
ATGAATGCTGAAATTCTTGCGGTTGGCTCAGAACTATTATTAGGTCAAATTACGAATACAAATGCGAGGTTTATCTCAAG
CCAGCTATCCGAGCTTGGCATCAACGTTTTTTATCATACCGTAGTAGGCGATAATGCAAAGCGTTTAGAACAAGCTATCG
AAGTGGCAGAGTCTCGTGCAGATCTCATTATTTTTTCGGGAGGACTTGGTCCGACAAAAGATGATTTAACGAAGGAAACG
ATTGCACGTCATCTTGGTGTTTCTCTTGAGTTTGATGAAGTAGCATTGACGTATATTGAGCAATTTTTTGCTAAACGAGG
ACGTCCAATGACGGAGAATAATCGTAAACAGGCATTAATTTTAGCTGGGAGTGAGGTATTAGCTAATCACCATGGAATGG
CTCCAGGTATGATCTTCACAAAAAATGATCGCACTTATATTTTATTACCAGGACCTCCAAAAGAGTTAGAACCAATGTTT
CAATTTGAGGCTAAACCTAAACTTGCTGCGATGCTTAATGATGGAGGGATCATTGCATCACATGTTATGCGATTTTATGG
AATTGGTGAGGCCGAGCTTGAAGTACAAGTTCAAACTATTTTAGATGCACAAACCAATCCAACAGTTGCTCCACTTGCTT
CTGATGGTGAGGTAACGTTACGCGTAACAGCTAAAGCCGCAACAGAGCAACAAGCTGACCAGCTTATTAAGGCAAAGGTT
GCAGAAATACAAGCACTTGTTGGTGATTATCAATATGGTGTAGATGATGATTCCCTTGCCTCAAAAACGGTAGAAATGCT
ACTGGATAATGAGCTAACGATTGCGGCTGCTGAAAGTTTAACTGCTGGTTTATTTCAATCTGAACTTGCGGAAATTCCAG
GGGTAGGCAATGCACTTATAGGAGGCGTTGTTACCTATGCAGCAGATGCGAAAGTAAAACAGCTAGGCATTTCACAAGAT
TTAATTGATACACATGGTGTTGTGAGTGCTGAGTGTGCAGCGGCAATGGCAAGTGCTGTTCGTGAGAAATTTGCTACAAA
TATTGGGATTGGCCTTACAGGAGAAGCAGGTCCCACTGCGCATGATCATCAGCCAGTAGGTACGGTTTGGATTGGTATTG
CTATAAATGATGAGGAGCCGCTTACATATTTACTTCATTTATCAGGCATGCGAAATACGAATCGACTCCGTGCGGTGAAA
TTTACATGTCATTATTTAATGCAGCTTTTAGAAGAACGTGGCTACGCAAAACGTTATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.942

98.329

0.511
  cinA Streptococcus mitis SK321

45.17

91.408

0.413
  cinA Streptococcus pneumoniae Rx1

44.909

91.408

0.411
  cinA Streptococcus pneumoniae TIGR4

44.909

91.408

0.411
  cinA Streptococcus pneumoniae R6

44.909

91.408

0.411
  cinA Streptococcus pneumoniae D39

44.648

91.408

0.408
  cinA Streptococcus mitis NCTC 12261

44.386

91.408

0.406
  cinA Streptococcus mutans UA159

44.063

90.453

0.399