Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QBO96_RS20650 Genome accession   NZ_CP122283
Coordinates   4104323..4105387 (+) Length   354 a.a.
NCBI ID   WP_016992835.1    Uniprot ID   A0AAE8QKH8
Organism   Lysinibacillus capsici strain TSBLM     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4099323..4110387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBO96_RS20625 (QBO96_20625) - 4100054..4100311 (+) 258 WP_004224939.1 DUF3243 domain-containing protein -
  QBO96_RS20630 (QBO96_20630) - 4100528..4101313 (+) 786 WP_026023397.1 DUF3388 domain-containing protein -
  QBO96_RS20635 (QBO96_20635) - 4101330..4102259 (+) 930 WP_175400707.1 helix-turn-helix domain-containing protein -
  QBO96_RS20640 (QBO96_20640) pgsA 4102307..4102885 (+) 579 WP_279494232.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QBO96_RS20645 (QBO96_20645) cinA 4102902..4104161 (+) 1260 WP_279494233.1 competence/damage-inducible protein A Machinery gene
  QBO96_RS20650 (QBO96_20650) recA 4104323..4105387 (+) 1065 WP_016992835.1 recombinase RecA Machinery gene
  QBO96_RS20655 (QBO96_20655) rny 4105903..4107462 (+) 1560 WP_004224930.1 ribonuclease Y -
  QBO96_RS20660 (QBO96_20660) - 4107689..4108417 (+) 729 WP_115673176.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  QBO96_RS20665 (QBO96_20665) - 4108417..4109118 (+) 702 WP_279494237.1 CpsD/CapB family tyrosine-protein kinase -
  QBO96_RS20670 (QBO96_20670) - 4109159..4109914 (+) 756 WP_233732463.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38105.23 Da        Isoelectric Point: 4.6371

>NTDB_id=814985 QBO96_RS20650 WP_016992835.1 4104323..4105387(+) (recA) [Lysinibacillus capsici strain TSBLM]
MSDRKAALEQALKQIEKNFGKGSIMKLGEKTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQATGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQVREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENTAVLEDIANK
IRASYGIAASSYTIAAHDDEEEMDEELMLLLEEE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=814985 QBO96_RS20650 WP_016992835.1 4104323..4105387(+) (recA) [Lysinibacillus capsici strain TSBLM]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCTCTAAAACAAATTGAAAAGAATTTTGGTAAAGGTTCCATCATGAAACT
CGGTGAAAAAACCGATTTAGAAATTGCGACATCTTCAAGTGGTTCACTTGCACTTGATGCTGCATTAGGAGTGGGTGGAT
ATCCACGTGGACGTATTATTGAAGTATACGGTCCAGAATCATCTGGTAAAACAACTGTTGCTCTACATGCCATTGCTGAA
GTACAAGCAACAGGTGGACAAGCAGCATTTATCGACGCTGAGCATGCATTAGACCCGATCTATGCACAAAAATTAGGTGT
CAATATTGATGAGCTATTGTTATCACAACCCGACACAGGTGAGCAAGCACTTGAAATCGCAGAAGCATTAGTGCGTAGTG
GTGCTATTGATATTATCGTCATTGACTCTGTTGCTGCCTTAGTGCCAAAAGCTGAAATTGAAGGGGATATGGGTGACTCT
CATGTCGGCTTACAAGCACGTCTAATGTCTCAAGCTTTACGTAAACTTTCAGGCGCGATTAATAAATCAAAAACGATTGC
TATTTTCATTAACCAAGTTCGTGAAAAAATTGGTGTCATGTTCGGTAATCCAGAAACAACACCAGGTGGACGTGCGCTTA
AGTTCTACAGCTCTGTCCGTTTAGAAGTGCGTCGTGCAGAAGCTATTAAACAGGGTAATGATATTGTTGGTAACCGTACT
AAAATTAAGATTGTTAAAAATAAAGTAGCACCACCTTTCCGTACAGCTGAAGTAGATATTATGTATGGAGAAGGAATTTC
TAAAGAAGGCGAAACAGTCGATTTAGGCGTAGAATTAGACATTGTACAAAAAAGTGGTTCTTGGTATGCATATGGCGATG
AGCGCTTAGGTCAAGGACGAGAAAATGCTAAACAGTATTTAAAAGAAAATACTGCTGTCCTAGAAGACATAGCAAATAAA
ATCCGAGCTTCTTATGGTATTGCGGCTTCTTCTTATACAATTGCTGCCCATGATGATGAAGAAGAGATGGATGAAGAATT
AATGTTACTTCTGGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.239

92.373

0.797
  recA Latilactobacillus sakei subsp. sakei 23K

75.46

92.09

0.695
  recA Streptococcus mitis SK321

63.989

100

0.653
  recA Streptococcus mitis NCTC 12261

63.712

100

0.65
  recA Streptococcus mutans UA159

63.056

100

0.641
  recA Streptococcus pneumoniae R6

65.23

98.305

0.641
  recA Streptococcus pneumoniae Rx1

65.23

98.305

0.641
  recA Streptococcus pneumoniae D39

65.23

98.305

0.641
  recA Streptococcus pneumoniae TIGR4

65.23

98.305

0.641
  recA Lactococcus lactis subsp. cremoris KW2

66.667

93.22

0.621
  recA Streptococcus pyogenes NZ131

67.073

92.655

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.046

92.938

0.605
  recA Neisseria gonorrhoeae MS11

65.046

92.938

0.605
  recA Neisseria gonorrhoeae MS11

65.046

92.938

0.605
  recA Acinetobacter baylyi ADP1

61.808

96.893

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.471

96.045

0.59
  recA Helicobacter pylori strain NCTC11637

64.308

91.808

0.59
  recA Ralstonia pseudosolanacearum GMI1000

63.415

92.655

0.588
  recA Helicobacter pylori 26695

64

91.808

0.588
  recA Glaesserella parasuis strain SC1401

60.465

97.175

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.19

92.09

0.582
  recA Acinetobacter baumannii D1279779

60.472

95.763

0.579
  recA Vibrio cholerae strain A1552

63.438

90.395

0.573
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.438

90.395

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

91.243

0.573
  recA Pseudomonas stutzeri DSM 10701

62.617

90.678

0.568