Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QBO96_RS20645 Genome accession   NZ_CP122283
Coordinates   4102902..4104161 (+) Length   419 a.a.
NCBI ID   WP_279494233.1    Uniprot ID   -
Organism   Lysinibacillus capsici strain TSBLM     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4097902..4109161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBO96_RS20615 (QBO96_20615) - 4097982..4099283 (+) 1302 WP_259950896.1 pitrilysin family protein -
  QBO96_RS20620 (QBO96_20620) - 4099280..4100008 (+) 729 WP_274771975.1 SDR family oxidoreductase -
  QBO96_RS20625 (QBO96_20625) - 4100054..4100311 (+) 258 WP_004224939.1 DUF3243 domain-containing protein -
  QBO96_RS20630 (QBO96_20630) - 4100528..4101313 (+) 786 WP_026023397.1 DUF3388 domain-containing protein -
  QBO96_RS20635 (QBO96_20635) - 4101330..4102259 (+) 930 WP_175400707.1 helix-turn-helix domain-containing protein -
  QBO96_RS20640 (QBO96_20640) pgsA 4102307..4102885 (+) 579 WP_279494232.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QBO96_RS20645 (QBO96_20645) cinA 4102902..4104161 (+) 1260 WP_279494233.1 competence/damage-inducible protein A Machinery gene
  QBO96_RS20650 (QBO96_20650) recA 4104323..4105387 (+) 1065 WP_016992835.1 recombinase RecA Machinery gene
  QBO96_RS20655 (QBO96_20655) rny 4105903..4107462 (+) 1560 WP_004224930.1 ribonuclease Y -
  QBO96_RS20660 (QBO96_20660) - 4107689..4108417 (+) 729 WP_115673176.1 Wzz/FepE/Etk N-terminal domain-containing protein -
  QBO96_RS20665 (QBO96_20665) - 4108417..4109118 (+) 702 WP_279494237.1 CpsD/CapB family tyrosine-protein kinase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45262.61 Da        Isoelectric Point: 4.7188

>NTDB_id=814984 QBO96_RS20645 WP_279494233.1 4102902..4104161(+) (cinA) [Lysinibacillus capsici strain TSBLM]
MNAEILAVGSELLLGQITNTNARFISSQLSELGINVFYHTVVGDNAKRLEQAIEVAESRADLIIFSGGLGPTKDDLTKET
IARHLGVSLEFDEVALTYIEQFFAKRGRPMTENNRKQALILAGSEVLANHHGMAPGMIFTKNDRTYILLPGPPKELEPMF
QFEAKPKLAAMLNDGGIIASHVMRFYGIGEAELEVQVQNILDAQTNPTVAPLASDGEVTLRVTAKAATEQQAGQLIKAKV
AEIQALVGDYQYGVDDDSLASKTVEMLLDNELTIAAAESLTAGLFQSELAEIPGVGNALIGGVVTYAADAKVKQLDISQE
LIDTHGVVSAECAAAMASAVREKFATNIGIGLTGEAGPTAHDHQPVGTVWIGIAINDEEPLTYLLHLSGMRNTNRLRAVK
FTCHYLMQLLEERGYTKRY

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=814984 QBO96_RS20645 WP_279494233.1 4102902..4104161(+) (cinA) [Lysinibacillus capsici strain TSBLM]
ATGAATGCTGAAATTCTTGCAGTTGGCTCAGAACTATTATTAGGTCAAATTACGAATACAAATGCGAGATTTATCTCAAG
CCAGCTATCCGAGCTTGGCATCAACGTTTTTTATCATACCGTAGTAGGCGATAATGCAAAGCGTTTAGAACAAGCTATCG
AAGTGGCAGAGTCTCGTGCAGATCTCATTATTTTTTCGGGAGGACTTGGTCCAACAAAAGATGATTTAACGAAGGAAACG
ATTGCACGTCATCTTGGTGTTTCTCTTGAGTTTGATGAAGTAGCATTGACGTATATTGAGCAATTTTTTGCTAAACGAGG
ACGTCCAATGACGGAAAATAATCGTAAACAGGCATTAATTTTAGCTGGGAGTGAAGTATTAGCTAATCACCATGGAATGG
CTCCAGGTATGATCTTCACAAAAAATGATCGCACTTATATTTTATTACCAGGACCTCCAAAAGAGTTAGAACCAATGTTT
CAATTTGAGGCTAAACCTAAACTTGCTGCGATGCTTAATGATGGAGGGATCATTGCATCACATGTTATGCGATTTTATGG
AATTGGTGAGGCCGAGCTTGAAGTACAAGTTCAAAATATTTTAGATGCACAAACCAATCCAACAGTTGCTCCACTTGCTT
CTGATGGTGAGGTAACGTTACGCGTAACAGCTAAAGCCGCAACAGAGCAACAAGCTGGCCAGCTTATTAAGGCAAAGGTT
GCAGAAATACAAGCACTTGTTGGTGATTATCAATATGGTGTAGATGATGATTCCCTTGCCTCAAAAACGGTAGAAATGCT
ACTGGATAATGAGCTAACAATTGCGGCTGCAGAAAGTTTAACTGCTGGTTTATTTCAATCTGAACTTGCGGAAATTCCAG
GGGTAGGCAATGCACTTATAGGAGGCGTTGTTACCTATGCAGCAGATGCGAAAGTAAAACAGCTAGACATTTCACAAGAA
TTAATTGATACACATGGTGTTGTGAGTGCTGAGTGTGCAGCGGCAATGGCAAGTGCTGTTCGTGAGAAATTTGCTACAAA
TATTGGGATTGGTCTTACAGGAGAAGCAGGTCCCACTGCACATGATCATCAGCCAGTAGGTACGGTTTGGATTGGTATTG
CCATAAATGACGAGGAGCCGCTTACATATTTACTTCATTTATCAGGCATGCGGAATACGAATCGACTCCGTGCGGTGAAA
TTTACATGCCATTATTTAATGCAACTTTTAGAAGAACGTGGCTACACAAAACGATATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.942

98.329

0.511
  cinA Streptococcus mitis SK321

45.431

91.408

0.415
  cinA Streptococcus pneumoniae Rx1

45.17

91.408

0.413
  cinA Streptococcus pneumoniae R6

45.17

91.408

0.413
  cinA Streptococcus pneumoniae TIGR4

45.17

91.408

0.413
  cinA Streptococcus pneumoniae D39

44.909

91.408

0.411
  cinA Streptococcus mitis NCTC 12261

44.648

91.408

0.408
  cinA Streptococcus mutans UA159

43.799

90.453

0.396