Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P3X63_RS09605 Genome accession   NZ_CP120679
Coordinates   1885258..1886295 (+) Length   345 a.a.
NCBI ID   WP_026587036.1    Uniprot ID   A0A6I7FCK4
Organism   Bacillus sp. HSf4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1880258..1891295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS09580 (P3X63_09580) - 1880997..1881254 (+) 258 WP_026587031.1 DUF3243 domain-containing protein -
  P3X63_RS09585 (P3X63_09585) - 1881468..1882259 (+) 792 WP_026587032.1 YmfK family protein -
  P3X63_RS09590 (P3X63_09590) - 1882277..1883173 (+) 897 WP_277692771.1 RodZ family helix-turn-helix domain-containing protein -
  P3X63_RS09595 (P3X63_09595) pgsA 1883235..1883816 (+) 582 WP_026587034.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P3X63_RS09600 (P3X63_09600) cinA 1883836..1885086 (+) 1251 WP_077736822.1 competence/damage-inducible protein A Machinery gene
  P3X63_RS09605 (P3X63_09605) recA 1885258..1886295 (+) 1038 WP_026587036.1 recombinase RecA Machinery gene
  P3X63_RS09610 (P3X63_09610) rny 1886637..1888196 (+) 1560 WP_026587037.1 ribonuclease Y -
  P3X63_RS09615 (P3X63_09615) - 1888490..1889287 (+) 798 WP_026587038.1 TIGR00282 family metallophosphoesterase -
  P3X63_RS09620 (P3X63_09620) spoVS 1889478..1889738 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  P3X63_RS09625 (P3X63_09625) - 1889836..1890756 (+) 921 WP_026587039.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37465.54 Da        Isoelectric Point: 4.7737

>NTDB_id=807663 P3X63_RS09605 WP_026587036.1 1885258..1886295(+) (recA) [Bacillus sp. HSf4]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYEDERLGQGRENAKQFLKENKDVLLTIQEQ
IREHYGLDTGASAPKDEEVQEELEF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=807663 P3X63_RS09605 WP_026587036.1 1885258..1886295(+) (recA) [Bacillus sp. HSf4]
ATGAGTGATCGTCAGGCAGCCTTAGACATGGCGCTTAAACAAATAGAAAAACAGTTTGGTAAAGGTTCGATTATGAAGCT
CGGTGAACAAACCGAAACAAGAATTTCAACTGTTCCGAGCGGCTCTTTAGCGCTCGATGCGGCTCTTGGAGTGGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGCCCGGAAAGTTCCGGTAAAACGACGGTGGCGCTTCATGCGATTGCCGAA
GTCCAGCAGCAGGGCGGACAGGCGGCGTTCATAGATGCGGAACACGCGCTTGACCCGGTTTACGCTCAAAAGCTCGGCGT
CAACATTGACGAGCTCCTGCTGTCACAGCCTGACACAGGGGAGCAGGCGCTGGAAATCGCCGAAGCCCTTGTCAGAAGCG
GAGCAGTGGACATCGTTGTCATTGACTCTGTCGCAGCTCTTGTCCCGAAAGCGGAAATCGAAGGAGATATGGGAGACTCC
CATGTCGGCTTACAGGCGAGGCTGATGTCCCAAGCGCTTCGGAAGCTTTCCGGCGCGATCAATAAATCGAAGACCATCGC
GATCTTCATTAACCAGATCCGTGAAAAAGTCGGTGTGATGTTCGGCAATCCGGAGACGACTCCGGGCGGAAGAGCGCTGA
AATTCTATTCTTCCGTACGCCTTGAAGTTCGCCGCGCCGAACAGCTGAAACAGGGGAATGACGTCATGGGGAACAAGACG
AAAATTAAAGTCGTCAAAAACAAAGTGGCGCCTCCATTCCGGACAGCTGAAGTGGACATTATGTACGGTGAAGGGATTTC
AAAAGAAGGGGAAATCATTGACCTCGGCACAGAGCTTGATATCGTGCAGAAAAGTGGAGCATGGTACTCTTATGAGGATG
AACGCCTTGGACAGGGCCGTGAAAACGCCAAGCAGTTCCTGAAAGAAAACAAGGACGTGCTTCTGACGATCCAAGAGCAG
ATCAGGGAGCACTACGGATTGGATACCGGCGCCTCGGCTCCTAAAGATGAAGAAGTTCAGGAAGAGCTCGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7FCK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.353

95.362

0.919
  recA Latilactobacillus sakei subsp. sakei 23K

75.077

94.203

0.707
  recA Streptococcus mitis SK321

68.208

100

0.684
  recA Streptococcus mitis NCTC 12261

67.919

100

0.681
  recA Streptococcus pneumoniae Rx1

67.826

100

0.678
  recA Streptococcus pneumoniae D39

67.826

100

0.678
  recA Streptococcus pneumoniae R6

67.826

100

0.678
  recA Streptococcus pneumoniae TIGR4

67.826

100

0.678
  recA Streptococcus mutans UA159

68.693

95.362

0.655
  recA Streptococcus pyogenes NZ131

68.293

95.072

0.649
  recA Lactococcus lactis subsp. cremoris KW2

67.273

95.652

0.643
  recA Ralstonia pseudosolanacearum GMI1000

65.244

95.072

0.62
  recA Neisseria gonorrhoeae MS11

65.443

94.783

0.62
  recA Neisseria gonorrhoeae MS11

65.443

94.783

0.62
  recA Neisseria gonorrhoeae strain FA1090

65.443

94.783

0.62
  recA Helicobacter pylori strain NCTC11637

62.647

98.551

0.617
  recA Helicobacter pylori 26695

62.647

98.551

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

98.551

0.614
  recA Glaesserella parasuis strain SC1401

60.405

100

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.783

0.6
  recA Acinetobacter baumannii D1279779

60.588

98.551

0.597
  recA Vibrio cholerae strain A1552

64.174

93.043

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

93.043

0.597
  recA Acinetobacter baylyi ADP1

59.706

98.551

0.588
  recA Pseudomonas stutzeri DSM 10701

62.5

92.754

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

93.623

0.571