Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   P3X63_RS09600 Genome accession   NZ_CP120679
Coordinates   1883836..1885086 (+) Length   416 a.a.
NCBI ID   WP_077736822.1    Uniprot ID   -
Organism   Bacillus sp. HSf4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1878836..1890086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3X63_RS09575 (P3X63_09575) - 1880195..1880926 (+) 732 WP_277692770.1 SDR family oxidoreductase -
  P3X63_RS09580 (P3X63_09580) - 1880997..1881254 (+) 258 WP_026587031.1 DUF3243 domain-containing protein -
  P3X63_RS09585 (P3X63_09585) - 1881468..1882259 (+) 792 WP_026587032.1 YmfK family protein -
  P3X63_RS09590 (P3X63_09590) - 1882277..1883173 (+) 897 WP_277692771.1 RodZ family helix-turn-helix domain-containing protein -
  P3X63_RS09595 (P3X63_09595) pgsA 1883235..1883816 (+) 582 WP_026587034.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  P3X63_RS09600 (P3X63_09600) cinA 1883836..1885086 (+) 1251 WP_077736822.1 competence/damage-inducible protein A Machinery gene
  P3X63_RS09605 (P3X63_09605) recA 1885258..1886295 (+) 1038 WP_026587036.1 recombinase RecA Machinery gene
  P3X63_RS09610 (P3X63_09610) rny 1886637..1888196 (+) 1560 WP_026587037.1 ribonuclease Y -
  P3X63_RS09615 (P3X63_09615) - 1888490..1889287 (+) 798 WP_026587038.1 TIGR00282 family metallophosphoesterase -
  P3X63_RS09620 (P3X63_09620) spoVS 1889478..1889738 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45569.99 Da        Isoelectric Point: 5.5862

>NTDB_id=807662 P3X63_RS09600 WP_077736822.1 1883836..1885086(+) (cinA) [Bacillus sp. HSf4]
MKLERKAEIIAVGSELLLGQIANTNAQFISKQLAEIGINVFYHTAVGDNPERLKQVIQTAQERSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLELDEKAFQSIEDYFKKTNRTMSPNNRKQALILKGSDVLPNRFGMAPGMLLEHESRFYMLLPGPPKEL
EPMFEHEAKPLILEKLGSKEKIVSRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPDETSRLL
KETEDRILERVGEFFYGYDDTSLVEELAKACTRKGVTLAAAESFTGGLFSSWLTEISGASEYFKGGAVCYTNELKVSAAG
VSEDTLNRFGAVSAQCAKELAKGIRAKTGSDIGISFTGVAGPNTQEGHPAGKVYIGISQKGKTEEAFEFMFAGSRSGVRK
RSAKYGCHLLLKMLEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=807662 P3X63_RS09600 WP_077736822.1 1883836..1885086(+) (cinA) [Bacillus sp. HSf4]
ATGAAATTGGAAAGAAAAGCGGAAATCATCGCTGTCGGATCTGAGCTTCTGCTCGGACAAATCGCCAATACGAACGCGCA
GTTTATCAGCAAACAGCTGGCTGAAATCGGCATTAATGTCTTTTATCACACAGCGGTCGGTGACAACCCCGAGCGTCTCA
AGCAAGTCATTCAAACCGCACAGGAAAGATCTGATTTTATTATTTTCTCAGGCGGGCTTGGACCGACGAAAGACGATTTG
ACAAAAGAAACGATCGCAGAGGTTGTCGGGCGTCCCCTTGAGCTTGATGAGAAGGCCTTTCAATCGATTGAGGATTACTT
TAAAAAAACGAACCGGACGATGTCGCCGAATAATCGCAAACAGGCGCTGATTTTGAAGGGATCGGACGTCCTGCCGAACC
GGTTCGGCATGGCGCCGGGGATGCTTTTGGAGCATGAGTCCCGTTTTTACATGCTTCTTCCCGGTCCGCCGAAAGAGCTT
GAACCGATGTTTGAACATGAAGCGAAGCCGCTGATTTTGGAAAAGCTCGGCTCAAAAGAAAAAATCGTTTCAAGGGTGCT
GCGGTTCTTTGGAATCGGTGAATCCCAGCTTGAAACGGATTTGGAAGATCTCATCGATGCGCAGACAAATCCGACGATCG
CCCCTTTGGCGGCAGACGGGGAAGTCACCCTCCGGCTGACGGCAAAGCATGCCGATCCGGATGAAACAAGCCGTCTGCTG
AAAGAAACGGAAGACCGCATTTTAGAGCGCGTCGGCGAATTCTTTTACGGGTATGATGATACATCGCTCGTGGAAGAGCT
TGCGAAGGCCTGCACCCGAAAAGGGGTGACTCTGGCGGCTGCGGAAAGCTTTACTGGAGGGCTCTTTTCCAGCTGGCTGA
CGGAAATAAGCGGTGCCAGTGAATATTTCAAAGGCGGTGCTGTCTGCTATACGAACGAATTGAAGGTTTCAGCCGCCGGC
GTCTCCGAAGATACGCTGAACCGCTTTGGCGCTGTCAGCGCGCAGTGCGCAAAAGAGCTTGCAAAAGGCATCAGAGCGAA
AACCGGAAGCGATATCGGCATCAGCTTTACGGGAGTGGCCGGACCTAACACCCAGGAAGGCCACCCGGCCGGAAAAGTAT
ATATCGGCATCTCTCAAAAAGGCAAAACAGAAGAGGCCTTTGAATTCATGTTCGCCGGTTCCCGGTCCGGCGTCCGGAAA
CGGTCCGCCAAATACGGCTGCCACCTTTTGCTGAAAATGCTGGAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

78.606

100

0.786
  cinA Streptococcus pneumoniae TIGR4

45.933

100

0.462
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mutans UA159

46.135

99.519

0.459
  cinA Streptococcus pneumoniae Rx1

45.455

100

0.457
  cinA Streptococcus pneumoniae R6

45.455

100

0.457
  cinA Streptococcus pneumoniae D39

45.215

100

0.454
  cinA Streptococcus suis isolate S10

42.597

92.548

0.394