Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PU629_RS15500 Genome accession   NZ_CP119107
Coordinates   3330226..3331266 (-) Length   346 a.a.
NCBI ID   WP_275280963.1    Uniprot ID   -
Organism   Pullulanibacillus sp. KACC 23026     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3325226..3336266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PU629_RS15485 (PU629_15485) - 3326069..3327016 (-) 948 WP_275280961.1 ABC transporter permease -
  PU629_RS15490 (PU629_15490) - 3327013..3327936 (-) 924 WP_275280962.1 ABC transporter ATP-binding protein -
  PU629_RS15495 (PU629_15495) rny 3328267..3329826 (-) 1560 WP_275284448.1 ribonuclease Y -
  PU629_RS15500 (PU629_15500) recA 3330226..3331266 (-) 1041 WP_275280963.1 recombinase RecA Machinery gene
  PU629_RS15505 (PU629_15505) cinA 3331527..3332759 (-) 1233 WP_275280964.1 competence/damage-inducible protein A Machinery gene
  PU629_RS15510 (PU629_15510) pgsA 3332839..3333423 (-) 585 WP_275280965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PU629_RS15515 (PU629_15515) - 3333597..3334526 (-) 930 WP_275280966.1 helix-turn-helix domain-containing protein -
  PU629_RS15520 (PU629_15520) - 3334548..3335324 (-) 777 WP_275280967.1 DUF3388 domain-containing protein -
  PU629_RS15525 (PU629_15525) - 3335538..3335798 (-) 261 WP_275280968.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37473.64 Da        Isoelectric Point: 4.9112

>NTDB_id=797649 PU629_RS15500 WP_275280963.1 3330226..3331266(-) (recA) [Pullulanibacillus sp. KACC 23026]
MSDRKQALDMALRQIEKQFGKGSIMKMGEQTDNRVSTVSSGSITLDIAMGVGGFPRGRIIEVYGPESSGKTTVALHAIAE
AQKIGGQAAFIDAEHALDPAYAKNLGVDIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLGGAISKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAETLKQGNDMVGNRT
KIKVVKNKVAPPFKQAEVDIMYGEGISKEGEILDIGSDLDIVQKSGAWYSFDEERLGQGRENAKQFLKENPEIASTIEKK
IRAHYGLDAEQTDVEQEGFVEQGELL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=797649 PU629_RS15500 WP_275280963.1 3330226..3331266(-) (recA) [Pullulanibacillus sp. KACC 23026]
ATGAGCGACCGCAAACAAGCCTTAGACATGGCTTTGAGACAGATAGAAAAGCAATTCGGAAAAGGATCCATCATGAAGAT
GGGTGAGCAAACGGATAATCGTGTATCAACCGTATCGAGCGGTTCCATAACTCTTGATATCGCTATGGGCGTCGGTGGTT
TCCCGAGAGGACGTATTATTGAAGTTTACGGCCCTGAATCCTCAGGTAAGACAACGGTCGCCCTTCATGCAATTGCCGAA
GCTCAAAAAATAGGCGGGCAAGCGGCCTTTATTGATGCAGAGCATGCGCTTGATCCGGCCTATGCGAAGAATCTTGGAGT
CGATATTGATGAATTGCTGCTTTCACAACCTGATACCGGTGAACAAGCCCTTGAAATTGCTGAAGCACTTGTTCGCAGTG
GAGCTGTTGATATTATTGTCATTGACTCAGTTGCAGCACTTGTTCCAAAGGCTGAGATCGAAGGCGAGATGGGGGATGCA
CACGTTGGTCTTCAAGCTCGTTTGATGTCTCAAGCGCTTCGTAAGTTAGGCGGGGCGATTAGCAAATCTAAGACTACAGC
TATTTTTATTAACCAGATTCGTGAAAAAGTCGGCGTTATGTTCGGAAACCCTGAAACGACGCCTGGTGGACGTGCTTTGA
AATTTTACTCGACCATCCGTTTAGAAGTGCGCAGAGCAGAAACGCTTAAGCAAGGTAATGATATGGTAGGGAACCGAACG
AAGATTAAAGTCGTCAAAAATAAAGTAGCGCCTCCTTTTAAACAAGCAGAGGTCGACATCATGTACGGAGAAGGCATTTC
AAAAGAAGGCGAAATTCTTGATATTGGCTCCGATCTCGATATTGTTCAGAAGAGCGGTGCCTGGTATTCATTTGATGAAG
AACGCCTTGGTCAGGGCCGTGAAAATGCCAAGCAATTTTTGAAAGAAAACCCTGAAATTGCCTCTACCATTGAAAAGAAA
ATCCGTGCTCATTACGGGTTAGATGCCGAGCAAACTGATGTTGAGCAAGAAGGTTTTGTTGAGCAAGGTGAATTGCTCTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.841

94.798

0.795
  recA Latilactobacillus sakei subsp. sakei 23K

72.239

96.821

0.699
  recA Streptococcus pneumoniae TIGR4

68.788

95.376

0.656
  recA Streptococcus pneumoniae Rx1

68.788

95.376

0.656
  recA Streptococcus pneumoniae D39

68.788

95.376

0.656
  recA Streptococcus pneumoniae R6

68.788

95.376

0.656
  recA Streptococcus mutans UA159

65.698

99.422

0.653
  recA Streptococcus mitis NCTC 12261

68.485

95.376

0.653
  recA Streptococcus mitis SK321

68.182

95.376

0.65
  recA Streptococcus pyogenes NZ131

66.463

94.798

0.63
  recA Lactococcus lactis subsp. cremoris KW2

65.758

95.376

0.627
  recA Neisseria gonorrhoeae MS11

63.095

97.11

0.613
  recA Neisseria gonorrhoeae MS11

63.095

97.11

0.613
  recA Neisseria gonorrhoeae strain FA1090

63.095

97.11

0.613
  recA Ralstonia pseudosolanacearum GMI1000

67.093

90.462

0.607
  recA Glaesserella parasuis strain SC1401

60.58

99.711

0.604
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

94.509

0.604
  recA Vibrio cholerae strain A1552

64.375

92.486

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.375

92.486

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.883

94.22

0.592
  recA Helicobacter pylori strain NCTC11637

61.702

95.087

0.587
  recA Helicobacter pylori 26695

61.702

95.087

0.587
  recA Acinetobacter baylyi ADP1

62.539

93.353

0.584
  recA Acinetobacter baumannii D1279779

63.125

92.486

0.584
  recA Pseudomonas stutzeri DSM 10701

62.928

92.775

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.938

93.064

0.558