Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PU629_RS15505 Genome accession   NZ_CP119107
Coordinates   3331527..3332759 (-) Length   410 a.a.
NCBI ID   WP_275280964.1    Uniprot ID   -
Organism   Pullulanibacillus sp. KACC 23026     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3326527..3337759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PU629_RS15490 (PU629_15490) - 3327013..3327936 (-) 924 WP_275280962.1 ABC transporter ATP-binding protein -
  PU629_RS15495 (PU629_15495) rny 3328267..3329826 (-) 1560 WP_275284448.1 ribonuclease Y -
  PU629_RS15500 (PU629_15500) recA 3330226..3331266 (-) 1041 WP_275280963.1 recombinase RecA Machinery gene
  PU629_RS15505 (PU629_15505) cinA 3331527..3332759 (-) 1233 WP_275280964.1 competence/damage-inducible protein A Machinery gene
  PU629_RS15510 (PU629_15510) pgsA 3332839..3333423 (-) 585 WP_275280965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PU629_RS15515 (PU629_15515) - 3333597..3334526 (-) 930 WP_275280966.1 helix-turn-helix domain-containing protein -
  PU629_RS15520 (PU629_15520) - 3334548..3335324 (-) 777 WP_275280967.1 DUF3388 domain-containing protein -
  PU629_RS15525 (PU629_15525) - 3335538..3335798 (-) 261 WP_275280968.1 DUF3243 domain-containing protein -
  PU629_RS15530 (PU629_15530) - 3335888..3336619 (-) 732 WP_275280969.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44579.96 Da        Isoelectric Point: 4.7252

>NTDB_id=797650 PU629_RS15505 WP_275280964.1 3331527..3332759(-) (cinA) [Pullulanibacillus sp. KACC 23026]
MNAEIIAVGTELLLGQIANTNAQFISQECAEIGINVFYHTVVGDNPERLKNTIKTAESRSDCLIFTGGLGPTKDDLTKET
LAQSLGRSLVMDEDALEKIEAYFKKTGRTMTENNRRQAIVLEGAQVLPNNHGMAPGMILEGESTRYILMPGPPSEMKPMF
MESVKPYLLSLQGERIHSRVLRFFGIGESQLETELMDLIDGQTNPTIAPYAKEGEVTLRLSARTNDTEKANEMLDEIEAK
ILERVGSFLYGYGEENSHAAVVFDLLKRKGLTVAMAESLTGGAFSQTLTDFAGASEIVKGGIVCYTNEVKENVLGVPKEV
LETDGAVSATCAKEMAERIRLLTEADMGISFTGVAGPSESEGKPVGTVFIGLSMADKETKILSLQLSGSRTAIRNRTVKQ
GLELIRKSLQ

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=797650 PU629_RS15505 WP_275280964.1 3331527..3332759(-) (cinA) [Pullulanibacillus sp. KACC 23026]
ATGAACGCTGAAATCATCGCTGTCGGAACCGAATTGTTGCTTGGACAAATCGCCAACACAAACGCTCAATTTATTTCACA
GGAATGCGCTGAAATTGGGATCAATGTCTTTTATCATACGGTCGTTGGGGATAATCCTGAACGACTAAAAAATACGATAA
AAACAGCTGAATCACGTTCGGACTGCCTGATATTCACAGGTGGATTAGGGCCAACAAAAGATGATCTGACAAAAGAGACG
CTTGCACAGTCTTTGGGAAGGTCATTAGTCATGGATGAGGACGCGCTTGAAAAAATCGAAGCTTACTTTAAAAAAACGGG
GCGAACGATGACGGAGAACAATCGTCGCCAAGCGATTGTTTTGGAGGGGGCACAAGTGCTTCCTAACAATCATGGCATGG
CGCCAGGAATGATTCTTGAAGGAGAATCCACTCGTTATATCTTAATGCCTGGACCGCCATCGGAAATGAAGCCCATGTTT
ATGGAAAGTGTAAAGCCTTATCTTCTGTCATTGCAAGGAGAGCGGATTCACTCAAGAGTGTTAAGATTTTTTGGGATCGG
TGAATCACAGCTTGAGACAGAGCTAATGGACTTGATTGATGGGCAAACCAATCCGACGATTGCACCGTATGCAAAAGAGG
GCGAGGTTACCCTGAGACTCTCCGCTCGAACAAATGATACCGAAAAAGCAAACGAGATGCTGGATGAAATCGAAGCAAAA
ATTTTAGAGCGCGTCGGTTCATTTTTGTATGGGTATGGAGAAGAAAACTCCCATGCAGCCGTGGTCTTTGATCTTTTAAA
GAGAAAAGGCTTAACGGTTGCTATGGCAGAAAGCCTAACTGGCGGTGCATTCTCACAAACTTTAACAGATTTTGCAGGCG
CATCGGAAATAGTTAAAGGCGGCATTGTCTGTTACACGAATGAAGTAAAAGAGAACGTGCTCGGAGTACCTAAAGAAGTA
TTGGAAACAGATGGGGCAGTTAGCGCAACTTGCGCGAAGGAAATGGCTGAACGAATTCGACTCTTGACTGAAGCTGATAT
GGGAATCAGCTTCACAGGCGTGGCAGGGCCATCAGAAAGTGAAGGCAAACCTGTCGGGACCGTTTTTATTGGTCTATCAA
TGGCAGATAAAGAGACAAAAATCCTTTCCCTTCAACTATCGGGCTCGCGCACGGCGATTCGTAACCGGACGGTCAAACAG
GGACTTGAACTCATTAGAAAAAGTCTCCAGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-251)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.488

100

0.605
  cinA Streptococcus mitis SK321

51.675

100

0.527
  cinA Streptococcus mutans UA159

52.427

100

0.527
  cinA Streptococcus pneumoniae TIGR4

51.435

100

0.524
  cinA Streptococcus mitis NCTC 12261

51.435

100

0.524
  cinA Streptococcus pneumoniae Rx1

50.957

100

0.52
  cinA Streptococcus pneumoniae R6

50.957

100

0.52
  cinA Streptococcus pneumoniae D39

50.718

100

0.517
  cinA Streptococcus suis isolate S10

43.405

100

0.441