Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PYW32_RS00275 Genome accession   NZ_CP118957
Coordinates   55719..56759 (+) Length   346 a.a.
NCBI ID   WP_016176088.1    Uniprot ID   S0JBE8
Organism   Enterococcus saccharolyticus subsp. saccharolyticus strain DSM 20726     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 50719..61759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PYW32_RS00255 yfmH 51337..52632 (+) 1296 WP_016176084.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  PYW32_RS00260 - 52705..53616 (+) 912 WP_016176085.1 helix-turn-helix domain-containing protein -
  PYW32_RS00265 pgsA 53657..54238 (+) 582 WP_016176086.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PYW32_RS00270 cinA 54364..55608 (+) 1245 WP_016176087.1 competence/damage-inducible protein A Machinery gene
  PYW32_RS00275 recA 55719..56759 (+) 1041 WP_016176088.1 recombinase RecA Machinery gene
  PYW32_RS00280 rny 57025..58581 (+) 1557 WP_016176089.1 ribonuclease Y -
  PYW32_RS00285 - 58648..58863 (+) 216 WP_016176090.1 hypothetical protein -
  PYW32_RS00290 - 58933..59127 (+) 195 WP_016176091.1 hypothetical protein -
  PYW32_RS00295 - 59124..59369 (+) 246 WP_016176092.1 hypothetical protein -
  PYW32_RS00300 - 59527..60744 (+) 1218 WP_016176093.1 ammonium transporter -
  PYW32_RS00305 - 60758..61099 (+) 342 WP_016176094.1 P-II family nitrogen regulator -
  PYW32_RS00310 - 61224..61499 (+) 276 WP_016176095.1 hypothetical protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37143.41 Da        Isoelectric Point: 5.0896

>NTDB_id=796777 PYW32_RS00275 WP_016176088.1 55719..56759(+) (recA) [Enterococcus saccharolyticus subsp. saccharolyticus strain DSM 20726]
MADDRKAALDAALKKIEKNFGKGAVMKLGEKADQRISTIPSGSLALDVALGVGGFPRGRIVEVYGPESSGKTTVALHAVA
EVQKQGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKSGTDIIGNR
TKIKVVKNKVAPPFKVAEVDIMYGEGISQVGELLDMAAEKDIIDKSGAWYSYKGDRIGQGRENVKNYMKDHPEMVAEVSA
RVRDAYGIGTGETLVEEEQEELPVEK

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=796777 PYW32_RS00275 WP_016176088.1 55719..56759(+) (recA) [Enterococcus saccharolyticus subsp. saccharolyticus strain DSM 20726]
GTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCATTGAAAAAGATTGAAAAGAATTTCGGTAAAGGCGCAGTAATGAA
ACTTGGTGAAAAAGCAGATCAACGTATCTCAACTATTCCAAGTGGTTCATTAGCACTGGATGTCGCATTAGGTGTAGGTG
GATTCCCACGAGGGCGTATCGTAGAAGTCTATGGACCAGAAAGTTCTGGTAAAACAACGGTTGCTTTACATGCTGTTGCA
GAAGTTCAAAAACAAGGTGGAACTGCCGCATTTATTGATGCAGAGCACGCTTTAGATCCTCAATATGCAGAAAAATTAGG
TGTAAATATTGATGAACTATTACTTTCTCAACCAGATACTGGTGAACAAGGTCTAGAAATTGCCGATGCATTAGTATCAA
GTGGTGCTGTTGATATTGTTGTTATTGACTCAGTAGCAGCCTTAGTACCACGCGCTGAAATTGATGGTGAGATGGGTGAT
GCTCACGTTGGTTTACAAGCACGTTTGATGTCTCAAGCATTACGTAAACTTTCAGGAACAATCAACAAAACAAAAACAAT
TGCCTTATTCATTAACCAAATTCGTGAAAAAGTTGGGGTAATGTTTGGGAATCCAGAAACAACACCTGGTGGACGTGCCT
TAAAATTCTATGCGACAGTCCGTTTAGAAGTACGTCGTGCTGAACAATTAAAATCTGGAACAGATATTATTGGGAACCGC
ACAAAAATTAAAGTGGTAAAAAACAAAGTAGCGCCACCATTTAAAGTAGCCGAAGTTGATATTATGTATGGCGAAGGAAT
TTCTCAAGTTGGGGAATTATTAGATATGGCAGCTGAAAAAGACATCATTGATAAAAGTGGTGCATGGTATTCATATAAAG
GTGACAGAATTGGACAAGGTCGTGAAAATGTCAAAAATTATATGAAAGATCATCCAGAAATGGTTGCTGAAGTTTCTGCA
CGTGTTCGTGATGCGTACGGTATTGGTACAGGCGAAACGTTAGTGGAAGAAGAACAGGAAGAACTTCCGGTAGAAAAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S0JBE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

83.129

94.22

0.783
  recA Bacillus subtilis subsp. subtilis str. 168

77.231

93.931

0.725
  recA Streptococcus mutans UA159

69.075

100

0.691
  recA Streptococcus pyogenes NZ131

71.601

95.665

0.685
  recA Streptococcus mitis SK321

69.096

99.133

0.685
  recA Streptococcus mitis NCTC 12261

69.006

98.844

0.682
  recA Streptococcus pneumoniae R6

69.208

98.555

0.682
  recA Streptococcus pneumoniae Rx1

69.208

98.555

0.682
  recA Streptococcus pneumoniae D39

69.208

98.555

0.682
  recA Streptococcus pneumoniae TIGR4

69.208

98.555

0.682
  recA Lactococcus lactis subsp. cremoris KW2

69.605

95.087

0.662
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.653

95.087

0.624
  recA Neisseria gonorrhoeae MS11

63.83

95.087

0.607
  recA Neisseria gonorrhoeae MS11

63.83

95.087

0.607
  recA Neisseria gonorrhoeae strain FA1090

63.83

95.087

0.607
  recA Acinetobacter baylyi ADP1

59.884

99.422

0.595
  recA Ralstonia pseudosolanacearum GMI1000

62.691

94.509

0.592
  recA Acinetobacter baumannii D1279779

59.184

99.133

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

93.931

0.575
  recA Glaesserella parasuis strain SC1401

61.801

93.064

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.182

95.087

0.572
  recA Pseudomonas stutzeri DSM 10701

60.991

93.353

0.569
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

93.642

0.564
  recA Vibrio cholerae strain A1552

60.185

93.642

0.564
  recA Helicobacter pylori strain NCTC11637

58.589

94.22

0.552
  recA Helicobacter pylori 26695

58.589

94.22

0.552