Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PYH52_RS07395 | Genome accession | NZ_CP118794 |
| Coordinates | 1528170..1529216 (-) | Length | 348 a.a. |
| NCBI ID | WP_002451246.1 | Uniprot ID | A0A2T4Q2T6 |
| Organism | Staphylococcus warneri strain 7067 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1525346..1599295 | 1528170..1529216 | within | 0 |
Gene organization within MGE regions
Location: 1525346..1599295
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYH52_RS07385 (PYH52_07380) | - | 1525827..1526042 (+) | 216 | WP_002467042.1 | hypothetical protein | - |
| PYH52_RS07390 (PYH52_07385) | rny | 1526164..1527723 (-) | 1560 | WP_015365062.1 | ribonuclease Y | - |
| PYH52_RS07395 (PYH52_07390) | recA | 1528170..1529216 (-) | 1047 | WP_002451246.1 | recombinase RecA | Machinery gene |
| PYH52_RS07400 (PYH52_07395) | - | 1529383..1530534 (-) | 1152 | WP_002465812.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| PYH52_RS07405 (PYH52_07400) | pgsA | 1530707..1531282 (-) | 576 | WP_002465809.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| PYH52_RS07410 (PYH52_07405) | - | 1531313..1531705 (-) | 393 | WP_002465806.1 | helix-turn-helix domain-containing protein | - |
| PYH52_RS07415 (PYH52_07410) | - | 1531726..1532562 (-) | 837 | WP_015365064.1 | YmfK family protein | - |
| PYH52_RS07420 (PYH52_07415) | - | 1532697..1533401 (-) | 705 | WP_002465810.1 | SDR family oxidoreductase | - |
| PYH52_RS07425 (PYH52_07420) | - | 1533398..1534687 (-) | 1290 | WP_015365066.1 | pitrilysin family protein | - |
| PYH52_RS07430 (PYH52_07425) | - | 1534687..1535958 (-) | 1272 | WP_002465808.1 | pitrilysin family protein | - |
| PYH52_RS07435 (PYH52_07430) | - | 1535986..1536699 (-) | 714 | WP_015365067.1 | GntR family transcriptional regulator | - |
| PYH52_RS07440 (PYH52_07435) | - | 1536702..1539098 (-) | 2397 | WP_002466061.1 | DNA translocase FtsK | - |
| PYH52_RS07445 (PYH52_07440) | - | 1539338..1541011 (-) | 1674 | WP_015365069.1 | ribonuclease J | - |
| PYH52_RS07450 (PYH52_07445) | pnp | 1541198..1543297 (-) | 2100 | WP_002466036.1 | polyribonucleotide nucleotidyltransferase | - |
| PYH52_RS07455 (PYH52_07450) | rpsO | 1543433..1543702 (-) | 270 | WP_002450539.1 | 30S ribosomal protein S15 | - |
| PYH52_RS07460 (PYH52_07455) | ribF | 1543816..1544787 (-) | 972 | WP_002466033.1 | riboflavin biosynthesis protein RibF | - |
| PYH52_RS07465 (PYH52_07460) | truB | 1544800..1545717 (-) | 918 | WP_002466042.1 | tRNA pseudouridine(55) synthase TruB | - |
| PYH52_RS07470 (PYH52_07465) | rbfA | 1545870..1546220 (-) | 351 | WP_002466047.1 | 30S ribosome-binding factor RbfA | - |
| PYH52_RS07475 (PYH52_07470) | infB | 1546360..1548525 (-) | 2166 | WP_015365072.1 | translation initiation factor IF-2 | - |
| PYH52_RS07480 (PYH52_07475) | - | 1548530..1548847 (-) | 318 | WP_002466040.1 | ribosomal L7Ae/L30e/S12e/Gadd45 family protein | - |
| PYH52_RS07485 (PYH52_07480) | - | 1548844..1549131 (-) | 288 | WP_002450545.1 | YlxR family protein | - |
| PYH52_RS07490 (PYH52_07485) | nusA | 1549151..1550383 (-) | 1233 | WP_015365073.1 | transcription termination factor NusA | - |
| PYH52_RS07495 (PYH52_07490) | rimP | 1550404..1550871 (-) | 468 | WP_002466062.1 | ribosome maturation factor RimP | - |
| PYH52_RS07500 (PYH52_07495) | - | 1551054..1555364 (-) | 4311 | WP_107543659.1 | PolC-type DNA polymerase III | - |
| PYH52_RS07505 (PYH52_07500) | - | 1555632..1557335 (-) | 1704 | WP_002466052.1 | proline--tRNA ligase | - |
| PYH52_RS07510 (PYH52_07505) | rseP | 1557355..1558641 (-) | 1287 | WP_002466035.1 | RIP metalloprotease RseP | - |
| PYH52_RS07515 (PYH52_07510) | - | 1558884..1559666 (-) | 783 | WP_002466065.1 | phosphatidate cytidylyltransferase | - |
| PYH52_RS07520 (PYH52_07515) | - | 1559670..1560440 (-) | 771 | WP_002466060.1 | isoprenyl transferase | - |
| PYH52_RS07525 (PYH52_07520) | frr | 1560673..1561227 (-) | 555 | WP_002450553.1 | ribosome recycling factor | - |
| PYH52_RS07530 (PYH52_07525) | pyrH | 1561243..1561965 (-) | 723 | WP_002450554.1 | UMP kinase | - |
| PYH52_RS07535 (PYH52_07530) | tsf | 1562106..1562984 (-) | 879 | WP_002466038.1 | translation elongation factor Ts | - |
| PYH52_RS07540 (PYH52_07535) | rpsB | 1563136..1563924 (-) | 789 | WP_002466032.1 | 30S ribosomal protein S2 | - |
| PYH52_RS07545 (PYH52_07540) | codY | 1564231..1565004 (-) | 774 | WP_002450557.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| PYH52_RS07550 (PYH52_07545) | hslU | 1565028..1566431 (-) | 1404 | WP_353418766.1 | ATP-dependent protease ATPase subunit HslU | - |
| PYH52_RS07555 (PYH52_07550) | hslV | 1566520..1567065 (-) | 546 | WP_002450559.1 | ATP-dependent protease subunit HslV | - |
| PYH52_RS07560 (PYH52_07555) | xerC | 1567062..1567955 (-) | 894 | WP_353418767.1 | tyrosine recombinase XerC | - |
| PYH52_RS07565 (PYH52_07560) | trmFO | 1568120..1569427 (-) | 1308 | WP_002466058.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| PYH52_RS07570 (PYH52_07565) | topA | 1569544..1571619 (-) | 2076 | WP_026088907.1 | type I DNA topoisomerase | - |
| PYH52_RS07575 (PYH52_07570) | dprA | 1571797..1572666 (-) | 870 | WP_031463954.1 | DNA-processing protein DprA | Machinery gene |
| PYH52_RS07580 (PYH52_07575) | sucD | 1572907..1573812 (-) | 906 | WP_002466045.1 | succinate--CoA ligase subunit alpha | - |
| PYH52_RS07585 (PYH52_07580) | sucC | 1573834..1575000 (-) | 1167 | WP_002466034.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| PYH52_RS07590 (PYH52_07585) | - | 1575108..1575878 (-) | 771 | WP_002466053.1 | ribonuclease HII | - |
| PYH52_RS07595 (PYH52_07590) | ylqF | 1575871..1576746 (-) | 876 | WP_002466050.1 | ribosome biogenesis GTPase YlqF | - |
| PYH52_RS07600 (PYH52_07595) | - | 1577046..1579646 (+) | 2601 | WP_002466048.1 | YfhO family protein | - |
| PYH52_RS07605 (PYH52_07600) | - | 1579639..1582248 (+) | 2610 | WP_002466046.1 | YfhO family protein | - |
| PYH52_RS07610 (PYH52_07605) | rplS | 1582414..1582764 (-) | 351 | WP_002466049.1 | 50S ribosomal protein L19 | - |
| PYH52_RS07615 (PYH52_07610) | trmD | 1582870..1583607 (-) | 738 | WP_002466037.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| PYH52_RS07620 (PYH52_07615) | rimM | 1583607..1584110 (-) | 504 | WP_002466057.1 | ribosome maturation factor RimM | - |
| PYH52_RS07625 (PYH52_07620) | rpsP | 1584278..1584553 (-) | 276 | WP_002466054.1 | 30S ribosomal protein S16 | - |
| PYH52_RS07630 (PYH52_07625) | ffh | 1585085..1586452 (-) | 1368 | WP_002450574.1 | signal recognition particle protein | - |
| PYH52_RS07635 (PYH52_07630) | - | 1586477..1586809 (-) | 333 | WP_002466066.1 | putative DNA-binding protein | - |
| PYH52_RS07640 (PYH52_07635) | ftsY | 1586796..1588040 (-) | 1245 | WP_002466030.1 | signal recognition particle-docking protein FtsY | - |
| PYH52_RS07645 (PYH52_07640) | smc | 1588037..1591606 (-) | 3570 | WP_015365084.1 | chromosome segregation protein SMC | - |
| PYH52_RS07650 (PYH52_07645) | rnc | 1591759..1592487 (-) | 729 | WP_015365085.1 | ribonuclease III | - |
| PYH52_RS07655 (PYH52_07650) | - | 1592598..1592831 (-) | 234 | WP_001830184.1 | acyl carrier protein | - |
| PYH52_RS07660 (PYH52_07655) | fabG | 1593044..1593778 (-) | 735 | WP_015365086.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| PYH52_RS07665 (PYH52_07660) | fabD | 1593778..1594698 (-) | 921 | WP_002466912.1 | ACP S-malonyltransferase | - |
| PYH52_RS07670 (PYH52_07665) | plsX | 1594691..1595677 (-) | 987 | WP_353418771.1 | phosphate acyltransferase PlsX | - |
| PYH52_RS07675 (PYH52_07670) | fapR | 1595670..1596239 (-) | 570 | WP_002466907.1 | transcription factor FapR | - |
| PYH52_RS07680 (PYH52_07675) | recG | 1596389..1598437 (-) | 2049 | WP_002466919.1 | ATP-dependent DNA helicase RecG | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37828.74 Da Isoelectric Point: 5.0133
>NTDB_id=795328 PYH52_RS07395 WP_002451246.1 1528170..1529216(-) (recA) [Staphylococcus warneri strain 7067]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
ETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQIKDEIDQ
KLREKLGIFDGDVEEKEEDAPKSLFDEE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTLDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
ETQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQEIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENEIVDKSGAWYSYNGERMGQGKENVKTYLKENPQIKDEIDQ
KLREKLGIFDGDVEEKEEDAPKSLFDEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=795328 PYH52_RS07395 WP_002451246.1 1528170..1529216(-) (recA) [Staphylococcus warneri strain 7067]
TTGGATAACGAACGTCAAAAAGCTCTCGATACAGTAATAAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTTTCAAGTACATCAAGTGGTTCAGTTACATTAGATAACGCATTAGGTGTAGGTG
GCTATCCTAAAGGAAGAATTATTGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTTGCATTACACGCTATTGCA
GAAACACAAAAAAACGGTGGCGTTGCTGCATTTATTGATGCTGAGCATGCATTAGATCCTGTTTATGCTCAAGCACTAGG
TGTAGATATTGATAATCTATATTTATCACAACCTGATCATGGGGAACAAGGTTTAGAGATTGCTGAAGCTTTTGTTCGTA
GTGGTGCAGTCGATATCGTAGTAGTCGATTCAGTAGCTGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTGCAAGCAAGATTAATGTCACAAGCATTACGTAAACTATCTGGAGCTATTTCCAAATCAAATACGAC
TGCCATCTTCATTAACCAAATTCGTGAAAAAGTAGGTGTGATGTTCGGTAACCCTGAAACAACACCAGGCGGTAGAGCAT
TAAAATTCTATAGTTCTGTTCGTTTAGAAGTTCGTCGTGCTGAACAATTGAAACAAGGACAAGAGATTGTTGGTAATAGA
ACTAAGATTAAAGTAGTTAAAAACAAAGTTGCACCACCATTCAGAGTTGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGCGAACTGATTGATCTTGGTGTTGAAAATGAAATCGTTGATAAATCTGGAGCTTGGTATTCATATAATG
GTGAAAGAATGGGACAAGGTAAAGAAAACGTTAAAACTTACCTTAAAGAAAATCCTCAAATTAAAGATGAAATCGATCAA
AAACTACGTGAGAAGCTCGGTATTTTTGATGGTGATGTAGAAGAAAAAGAAGAAGACGCACCGAAGTCATTATTTGATGA
AGAATAA
TTGGATAACGAACGTCAAAAAGCTCTCGATACAGTAATAAAAAATATGGAAAAATCATTTGGTAAAGGTGCAGTAATGAA
ATTAGGCGATAATAAAGGTCGCAGAGTTTCAAGTACATCAAGTGGTTCAGTTACATTAGATAACGCATTAGGTGTAGGTG
GCTATCCTAAAGGAAGAATTATTGAAATATATGGACCAGAAAGTTCTGGTAAAACTACAGTTGCATTACACGCTATTGCA
GAAACACAAAAAAACGGTGGCGTTGCTGCATTTATTGATGCTGAGCATGCATTAGATCCTGTTTATGCTCAAGCACTAGG
TGTAGATATTGATAATCTATATTTATCACAACCTGATCATGGGGAACAAGGTTTAGAGATTGCTGAAGCTTTTGTTCGTA
GTGGTGCAGTCGATATCGTAGTAGTCGATTCAGTAGCTGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTGCAAGCAAGATTAATGTCACAAGCATTACGTAAACTATCTGGAGCTATTTCCAAATCAAATACGAC
TGCCATCTTCATTAACCAAATTCGTGAAAAAGTAGGTGTGATGTTCGGTAACCCTGAAACAACACCAGGCGGTAGAGCAT
TAAAATTCTATAGTTCTGTTCGTTTAGAAGTTCGTCGTGCTGAACAATTGAAACAAGGACAAGAGATTGTTGGTAATAGA
ACTAAGATTAAAGTAGTTAAAAACAAAGTTGCACCACCATTCAGAGTTGCAGAAGTTGATATCATGTATGGTCAAGGTAT
CTCTAAAGAAGGCGAACTGATTGATCTTGGTGTTGAAAATGAAATCGTTGATAAATCTGGAGCTTGGTATTCATATAATG
GTGAAAGAATGGGACAAGGTAAAGAAAACGTTAAAACTTACCTTAAAGAAAATCCTCAAATTAAAGATGAAATCGATCAA
AAACTACGTGAGAAGCTCGGTATTTTTGATGGTGATGTAGAAGAAAAAGAAGAAGACGCACCGAAGTCATTATTTGATGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.