Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PWS06_RS04110 Genome accession   NZ_CP118532
Coordinates   849956..850999 (+) Length   347 a.a.
NCBI ID   WP_005436413.1    Uniprot ID   A0A9X3RWW6
Organism   Vibrio harveyi strain 160-19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 844956..855999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PWS06_RS04095 rpoS 845548..846531 (+) 984 WP_005452115.1 RNA polymerase sigma factor RpoS Regulator
  PWS06_RS04100 mutS 846625..849186 (-) 2562 WP_009698766.1 DNA mismatch repair protein MutS -
  PWS06_RS04105 pncC 849272..849754 (+) 483 WP_005452118.1 nicotinamide-nucleotide amidase -
  PWS06_RS04110 recA 849956..850999 (+) 1044 WP_005436413.1 recombinase RecA Machinery gene
  PWS06_RS04115 recX 851206..851673 (+) 468 WP_009698765.1 recombination regulator RecX -
  PWS06_RS04120 alaS 851816..854398 (+) 2583 WP_114321176.1 alanine--tRNA ligase -
  PWS06_RS04125 - 854601..855788 (+) 1188 WP_005452123.1 aspartate kinase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37458.90 Da        Isoelectric Point: 4.9743

>NTDB_id=792979 PWS06_RS04110 WP_005436413.1 849956..850999(+) (recA) [Vibrio harveyi strain 160-19]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGKANACNYLRENPEIGKTIDT
KLREMLLSPALPEAPESGEKSEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=792979 PWS06_RS04110 WP_005436413.1 849956..850999(+) (recA) [Vibrio harveyi strain 160-19]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATTATGCG
CCTTGGTGATAACCGCGCAATGGACGTAGAAACCATCTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTTGAGCTGATCGCT
GCTGCGCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCAGAGCACGCGCTAGATCCTGTATACGCGAAGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAGCCTGATACGGGTGAGCAAGCGCTAGAGATCTGTGACGCACTTGCACGTT
CTGGTGCTATTGACGTTATGGTGGTTGACTCTGTTGCAGCACTAACACCAAAAGCAGAAATTGAAGGCGAAATGGGTGAC
AGCCACATGGGTCTTCAAGCACGTATGCTTTCTCAAGCAATGCGTAAGCTAACGGGTAACCTAAAACAGTCTAACTGTAT
GTGTATCTTTATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACAACGACTGGTGGTAACGCAC
TTAAGTTCTACGCTTCTGTTCGTCTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGTGACGAAGTAGTAGGTAACGAA
ACGCGCATCAAAGTTGTTAAGAACAAGATTGCTGCACCGTTTAAAGAAGCAAACACGCAAATCATGTACGGCCAAGGTTT
CAACCGTGAAGGTGAGCTGATTGACCTAGGCGTGAAGCACAAGCTAGTTGAAAAAGCAGGTGCGTGGTACAGCTACCAAG
GCGACAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTACGCGAAAACCCAGAAATCGGTAAGACTATCGATACT
AAACTGCGTGAAATGCTACTTTCACCAGCACTACCTGAAGCACCAGAATCAGGTGAAAAATCAGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

95.441

94.813

0.905
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.441

94.813

0.905
  recA Acinetobacter baylyi ADP1

72.543

99.712

0.723
  recA Pseudomonas stutzeri DSM 10701

75.841

94.236

0.715
  recA Acinetobacter baumannii D1279779

75

94.524

0.709
  recA Glaesserella parasuis strain SC1401

70.859

93.948

0.666
  recA Neisseria gonorrhoeae MS11

68.712

93.948

0.646
  recA Neisseria gonorrhoeae MS11

68.712

93.948

0.646
  recA Neisseria gonorrhoeae strain FA1090

68.712

93.948

0.646
  recA Ralstonia pseudosolanacearum GMI1000

71.061

89.625

0.637
  recA Helicobacter pylori strain NCTC11637

60.882

97.983

0.597
  recA Helicobacter pylori 26695

60.588

97.983

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

91.931

0.585
  recA Streptococcus pneumoniae R6

62.539

93.084

0.582
  recA Streptococcus pneumoniae Rx1

62.539

93.084

0.582
  recA Streptococcus pneumoniae D39

62.539

93.084

0.582
  recA Streptococcus pneumoniae TIGR4

62.539

93.084

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.507

0.582
  recA Streptococcus mitis NCTC 12261

62.229

93.084

0.579
  recA Streptococcus mitis SK321

61.92

93.084

0.576
  recA Streptococcus mutans UA159

60.923

93.66

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

95.389

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.507

0.568
  recA Streptococcus pyogenes NZ131

60.615

93.66

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

59.215

95.389

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.062

93.084

0.559