Detailed information NTG0792977

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PWS06_RS04095
• Genome accession: NZ_CP118532
• Coordinates: 845548..846531 (+)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain 160-19
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 840548..851531

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PWS06_RS04060	ftsB	840554..840835 (+)	282	WP_005452106.1	cell division protein FtsB	-
PWS06_RS04065	ispD	840837..841547 (+)	711	WP_038899663.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PWS06_RS04070	ispF	841562..842038 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PWS06_RS04075	truD	842084..843127 (+)	1044	WP_038899661.1	tRNA pseudouridine(13) synthase TruD	-
PWS06_RS04080	surE	843127..843903 (+)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
PWS06_RS04085	-	843903..844529 (+)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PWS06_RS04090	-	844544..845467 (+)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
PWS06_RS04095	rpoS	845548..846531 (+)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
PWS06_RS04100	mutS	846625..849186 (-)	2562	WP_009698766.1	DNA mismatch repair protein MutS	-
PWS06_RS04105	pncC	849272..849754 (+)	483	WP_005452118.1	nicotinamide-nucleotide amidase	-
PWS06_RS04110	recA	849956..850999 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=792977 PWS06_RS04095 WP_005452115.1 845548..846531(+) (rpoS) [Vibrio harveyi strain 160-19]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=792977 PWS06_RS04095 WP_005452115.1 845548..846531(+) (rpoS) [Vibrio harveyi strain 160-19]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GACGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCCGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAAATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856