Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EsVE80_RS00795 Genome accession   NZ_AP022822
Coordinates   177085..178125 (+) Length   346 a.a.
NCBI ID   WP_173102033.1    Uniprot ID   A0A679IJC1
Organism   Enterococcus saigonensis strain VE80     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 172085..183125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EsVE80_RS00775 (EsVE80_01600) ymfI 173225..173950 (+) 726 WP_173102029.1 elongation factor P 5-aminopentanone reductase -
  EsVE80_RS00780 (EsVE80_01610) - 173971..174882 (+) 912 WP_173102030.1 helix-turn-helix domain-containing protein -
  EsVE80_RS00785 (EsVE80_01620) pgsA 174919..175497 (+) 579 WP_173102031.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EsVE80_RS00790 (EsVE80_01630) cinA 175630..176871 (+) 1242 WP_173102032.1 competence/damage-inducible protein A Machinery gene
  EsVE80_RS00795 (EsVE80_01640) recA 177085..178125 (+) 1041 WP_173102033.1 recombinase RecA Machinery gene
  EsVE80_RS00800 (EsVE80_01650) - 178748..179692 (+) 945 WP_173102034.1 sugar ABC transporter permease -
  EsVE80_RS00805 (EsVE80_01660) - 179706..180632 (+) 927 WP_173102035.1 carbohydrate ABC transporter permease -
  EsVE80_RS00810 (EsVE80_01670) - 180651..182120 (+) 1470 WP_173102036.1 ABC transporter substrate-binding protein -
  EsVE80_RS00815 (EsVE80_01680) - 182322..182936 (+) 615 WP_173102037.1 YesL family protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37076.19 Da        Isoelectric Point: 4.9640

>NTDB_id=79232 EsVE80_RS00795 WP_173102033.1 177085..178125(+) (recA) [Enterococcus saigonensis strain VE80]
MADDRKAALDAALKKIEKNYGKGAVMKLGEKADQQVSTIPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPLYAQNLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVVDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGSINKTKTIAVFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQLKSGTDIIGNR
TKIKVVKNKVAPPFKVAEVDLMYGQGISQEGELLDMAVEQDIVDKSGAWYSYKGDRIGQGRDNAKNYMKEHPEMKAEIST
RVREAYGIGDGTEVTVEEAQAELPLD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=79232 EsVE80_RS00795 WP_173102033.1 177085..178125(+) (recA) [Enterococcus saigonensis strain VE80]
TTGGCAGACGATCGCAAAGCAGCCTTAGATGCTGCATTAAAGAAAATTGAAAAAAATTACGGTAAAGGTGCCGTAATGAA
ATTAGGAGAAAAGGCAGATCAACAAGTTTCTACAATTCCAAGTGGCTCACTTGCTCTAGATGTAGCTTTAGGTGTGGGTG
GATACCCGCGTGGTCGTATTGTTGAAATTTATGGTCCTGAAAGTTCTGGTAAAACAACCGTTGCGTTACATGCCATTGCA
GAAGTACAAAAAAACGGCGGTACAGCTGCTTTTATCGATGCTGAACATGCCTTAGATCCTTTATATGCACAAAATTTAGG
GGTTAATATTGACGAGTTATTATTATCACAACCAGATACTGGTGAACAAGGTTTAGAAATTGCCGATGCTTTAGTTTCCA
GCGGTGCAATTGATATCGTTGTAGTCGATTCGGTTGCGGCGTTAGTACCCCGTGCGGAAATTGATGGTGAAATGGGAGAT
GCTCACGTTGGTTTGCAAGCCCGTTTGATGTCTCAAGCATTACGTAAACTATCAGGCTCTATTAATAAAACGAAAACAAT
TGCCGTCTTTATCAACCAAATTCGTGAAAAAGTTGGTATTATGTTTGGTAATCCTGAAACAACTCCTGGTGGCCGTGCCC
TGAAATTCTATGCAACTATCCGTTTAGAAGTTCGTCGTGCGGAACAATTAAAATCTGGAACAGATATTATTGGGAATCGG
ACTAAGATTAAAGTTGTTAAAAACAAAGTAGCGCCACCTTTTAAAGTAGCGGAAGTTGACTTGATGTATGGCCAAGGTAT
TTCCCAAGAAGGAGAACTTTTAGATATGGCGGTTGAACAAGACATCGTCGATAAAAGCGGTGCTTGGTATTCATACAAAG
GTGATCGTATCGGACAAGGTCGGGACAACGCCAAAAATTATATGAAAGAACATCCTGAAATGAAAGCCGAAATATCCACC
CGTGTTAGAGAAGCATACGGTATTGGAGATGGAACGGAAGTAACGGTTGAAGAAGCACAAGCAGAATTACCACTGGATTA
G

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679IJC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.098

94.798

0.769
  recA Bacillus subtilis subsp. subtilis str. 168

76.615

93.931

0.72
  recA Streptococcus mutans UA159

68.786

100

0.688
  recA Streptococcus pneumoniae TIGR4

68.915

98.555

0.679
  recA Streptococcus pneumoniae R6

68.915

98.555

0.679
  recA Streptococcus pneumoniae Rx1

68.915

98.555

0.679
  recA Streptococcus pneumoniae D39

68.915

98.555

0.679
  recA Streptococcus pyogenes NZ131

70.695

95.665

0.676
  recA Streptococcus mitis SK321

69.76

96.532

0.673
  recA Streptococcus mitis NCTC 12261

69.254

96.821

0.671
  recA Lactococcus lactis subsp. cremoris KW2

68.358

96.821

0.662
  recA Neisseria gonorrhoeae strain FA1090

62.428

100

0.624
  recA Neisseria gonorrhoeae MS11

62.428

100

0.624
  recA Neisseria gonorrhoeae MS11

62.428

100

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.134

95.087

0.61
  recA Acinetobacter baylyi ADP1

62.963

93.642

0.59
  recA Ralstonia pseudosolanacearum GMI1000

62.848

93.353

0.587
  recA Acinetobacter baumannii D1279779

62.346

93.642

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.398

95.087

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.606

95.376

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.728

93.642

0.578
  recA Vibrio cholerae strain A1552

61.728

93.642

0.578
  recA Pseudomonas stutzeri DSM 10701

61.61

93.353

0.575
  recA Glaesserella parasuis strain SC1401

61.682

92.775

0.572
  recA Helicobacter pylori 26695

60.429

94.22

0.569
  recA Helicobacter pylori strain NCTC11637

60.429

94.22

0.569

Multiple sequence alignment