Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EsVE80_RS00790 Genome accession   NZ_AP022822
Coordinates   175630..176871 (+) Length   413 a.a.
NCBI ID   WP_173102032.1    Uniprot ID   A0A679I889
Organism   Enterococcus saigonensis strain VE80     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 170630..181871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EsVE80_RS00765 (EsVE80_01580) yfmF 170664..171926 (+) 1263 WP_173102028.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  EsVE80_RS00770 (EsVE80_01590) yfmH 171923..173221 (+) 1299 WP_173104090.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  EsVE80_RS00775 (EsVE80_01600) ymfI 173225..173950 (+) 726 WP_173102029.1 elongation factor P 5-aminopentanone reductase -
  EsVE80_RS00780 (EsVE80_01610) - 173971..174882 (+) 912 WP_173102030.1 helix-turn-helix domain-containing protein -
  EsVE80_RS00785 (EsVE80_01620) pgsA 174919..175497 (+) 579 WP_173102031.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EsVE80_RS00790 (EsVE80_01630) cinA 175630..176871 (+) 1242 WP_173102032.1 competence/damage-inducible protein A Machinery gene
  EsVE80_RS00795 (EsVE80_01640) recA 177085..178125 (+) 1041 WP_173102033.1 recombinase RecA Machinery gene
  EsVE80_RS00800 (EsVE80_01650) - 178748..179692 (+) 945 WP_173102034.1 sugar ABC transporter permease -
  EsVE80_RS00805 (EsVE80_01660) - 179706..180632 (+) 927 WP_173102035.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45059.49 Da        Isoelectric Point: 4.6830

>NTDB_id=79231 EsVE80_RS00790 WP_173102032.1 175630..176871(+) (cinA) [Enterococcus saigonensis strain VE80]
MKAEIIAVGTEILLGQVVNTNATFISEELADLGIEVYYHSVVGDNPERLESLLKTADNRSDLVVLCGGLGPTTDDLTKDV
VAKYVGQNLVEDVAGRKELDLFFTRAKRKMTSNNLRQVLVFEDGIALPNETGLAIGIFYQSSTTAFLLLPGPPSELRPMF
LHHGKALLTEKFPQADKLISRVLRFYGIGESQLVTQLADLIEEQTNPTIAPYAKPNEVTLRLTAKVQDEISGIKLLDKTE
SAILEEVGEYFYGYGEENSLEAVVVKLLQEKKCRVTAAESLTAGQFQATLANVSGASAIFAGGFVTYAKEQKEQLLQIDP
ALLDEYGVVSEECAKAMAQNARTIVGADYALSFTGVAGPTELEGQPVGTVWIGLASETEVKAYLYHFTRNRSYVRHSAVM
AGLDLLRRTLLAK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=79231 EsVE80_RS00790 WP_173102032.1 175630..176871(+) (cinA) [Enterococcus saigonensis strain VE80]
TTGAAAGCAGAAATTATTGCAGTAGGAACAGAAATTTTATTAGGACAAGTCGTTAATACCAATGCGACTTTTATTTCAGA
AGAATTAGCAGATTTGGGGATTGAGGTTTATTATCATAGTGTAGTAGGGGATAATCCCGAACGCTTAGAAAGTTTGCTAA
AAACAGCAGATAATCGTAGTGATTTAGTTGTTTTGTGCGGTGGTTTGGGGCCAACAACAGATGATTTAACAAAAGACGTT
GTAGCCAAATACGTCGGGCAAAATTTAGTGGAAGATGTTGCAGGTCGCAAGGAATTAGATCTCTTTTTTACGCGAGCCAA
GCGAAAAATGACCTCCAATAATTTAAGACAGGTATTGGTTTTTGAAGACGGTATTGCGTTACCAAATGAGACAGGTCTTG
CCATTGGTATTTTTTATCAAAGCTCGACAACTGCTTTTCTACTTTTACCAGGACCACCTTCAGAATTGCGTCCGATGTTT
TTGCACCATGGAAAAGCCTTATTAACAGAAAAATTTCCACAAGCAGATAAACTTATTTCTCGTGTACTGCGTTTTTATGG
AATTGGAGAATCCCAATTGGTGACACAACTAGCTGATTTAATTGAAGAACAAACAAATCCAACCATCGCTCCGTATGCTA
AACCAAATGAGGTTACATTGCGACTAACAGCCAAAGTACAAGATGAAATAAGCGGAATAAAATTATTAGATAAGACGGAA
TCAGCCATTTTAGAGGAGGTGGGGGAGTACTTTTACGGTTATGGCGAAGAAAATTCATTAGAAGCAGTTGTCGTTAAATT
ATTGCAGGAAAAAAAATGTCGTGTAACAGCAGCAGAAAGTTTAACGGCAGGTCAGTTTCAAGCCACCCTTGCCAACGTTA
GTGGTGCTTCAGCGATTTTTGCAGGCGGTTTTGTGACATATGCAAAAGAACAAAAAGAACAATTACTACAAATTGATCCG
GCTTTATTGGATGAGTATGGCGTTGTTAGCGAAGAATGTGCCAAAGCGATGGCTCAAAATGCACGCACAATTGTTGGTGC
TGACTATGCGCTGAGTTTTACCGGCGTAGCCGGGCCCACTGAACTAGAAGGACAGCCAGTAGGAACAGTTTGGATTGGAT
TAGCCAGTGAAACAGAAGTTAAAGCATATTTGTATCACTTCACGCGCAATCGTAGTTACGTGCGTCATAGTGCTGTTATG
GCGGGGTTGGATTTATTGCGCCGTACGCTTTTAGCAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679I889

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

53.125

100

0.535
  cinA Streptococcus mitis SK321

52.494

100

0.535
  cinA Streptococcus pneumoniae TIGR4

52.494

100

0.535
  cinA Streptococcus mitis NCTC 12261

52.257

100

0.533
  cinA Streptococcus pneumoniae D39

52.257

100

0.533
  cinA Streptococcus pneumoniae R6

52.019

100

0.53
  cinA Streptococcus pneumoniae Rx1

52.019

100

0.53
  cinA Bacillus subtilis subsp. subtilis str. 168

46.845

99.758

0.467
  cinA Streptococcus suis isolate S10

43.301

100

0.438

Multiple sequence alignment