Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PT671_RS00875 Genome accession   NZ_CP118021
Coordinates   261085..262131 (-) Length   348 a.a.
NCBI ID   WP_003221008.1    Uniprot ID   E0TV17
Organism   Bacillus spizizenii strain B-354     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 256085..267131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS00855 spoVS 256579..256839 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  PT671_RS00860 ymdB 257038..257832 (-) 795 WP_003221012.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  PT671_RS00865 rny 257902..259464 (-) 1563 WP_003221010.1 ribonuclease Y -
  PT671_RS00870 - 259740..260915 (-) 1176 WP_003221009.1 serine hydrolase domain-containing protein -
  PT671_RS00875 recA 261085..262131 (-) 1047 WP_003221008.1 recombinase RecA Machinery gene
  PT671_RS00880 cinA 262304..263554 (-) 1251 WP_003221005.1 competence/damage-inducible protein A Machinery gene
  PT671_RS00885 pgsA 263572..264153 (-) 582 WP_003221002.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PT671_RS00890 rodZ 264204..265118 (-) 915 WP_003221001.1 cell shape determination protein RodZ -
  PT671_RS00895 - 265137..265928 (-) 792 WP_003220998.1 DUF3388 domain-containing protein -
  PT671_RS00900 - 266058..266315 (-) 258 WP_003220996.1 DUF3243 domain-containing protein -
  PT671_RS00905 ymfI 266396..267124 (-) 729 WP_003220995.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37954.07 Da        Isoelectric Point: 4.8458

>NTDB_id=789118 PT671_RS00875 WP_003221008.1 261085..262131(-) (recA) [Bacillus spizizenii strain B-354]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNHGAAQQQAGETQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=789118 PT671_RS00875 WP_003221008.1 261085..262131(-) (recA) [Bacillus spizizenii strain B-354]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCTATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGCGGCTCCCTCGCTCTTGATACAGCACTAGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATATGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCGATTGCTGAG
GTTCAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTTGGAGT
CAATATCGAAGAGCTTTTACTGTCTCAGCCTGACACAGGTGAGCAGGCGCTTGAAATTGCGGAAGCGCTGGTTCGAAGCG
GTGCAGTTGACATTGTTGTTGTCGACTCTGTGGCGGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGAGATTCG
CATGTCGGTTTACAAGCTCGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGGGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGCGCGCTGA
AATTCTACTCTTCCGTGCGTCTTGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAACGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTAGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATCTC
AAAAGAAGGCGAAATCATTGATCTTGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTATTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCTTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTACGGCTTGGATAATCACGGAGCAGCGCAGCAGCAAGCTGGAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0TV17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

98.851

100

0.989
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

93.966

0.704
  recA Streptococcus pneumoniae R6

65.909

100

0.667
  recA Streptococcus pneumoniae Rx1

65.909

100

0.667
  recA Streptococcus pneumoniae D39

65.909

100

0.667
  recA Streptococcus pneumoniae TIGR4

65.909

100

0.667
  recA Streptococcus mitis SK321

66.86

98.851

0.661
  recA Streptococcus mitis NCTC 12261

68.788

94.828

0.652
  recA Streptococcus mutans UA159

68.389

94.54

0.647
  recA Streptococcus pyogenes NZ131

67.683

94.253

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.478

99.138

0.629
  recA Neisseria gonorrhoeae MS11

63.478

99.138

0.629
  recA Neisseria gonorrhoeae MS11

63.478

99.138

0.629
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Helicobacter pylori 26695

65.231

93.391

0.609
  recA Helicobacter pylori strain NCTC11637

65.231

93.391

0.609
  recA Acinetobacter baylyi ADP1

60.231

99.713

0.601
  recA Ralstonia pseudosolanacearum GMI1000

65.723

91.379

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

93.966

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

93.966

0.601
  recA Glaesserella parasuis strain SC1401

60

99.138

0.595
  recA Acinetobacter baumannii D1279779

59.71

99.138

0.592
  recA Vibrio cholerae strain A1552

63.863

92.241

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

92.241

0.589
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563