Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PT671_RS00880 Genome accession   NZ_CP118021
Coordinates   262304..263554 (-) Length   416 a.a.
NCBI ID   WP_003221005.1    Uniprot ID   E0TV16
Organism   Bacillus spizizenii strain B-354     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 257304..268554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT671_RS00865 rny 257902..259464 (-) 1563 WP_003221010.1 ribonuclease Y -
  PT671_RS00870 - 259740..260915 (-) 1176 WP_003221009.1 serine hydrolase domain-containing protein -
  PT671_RS00875 recA 261085..262131 (-) 1047 WP_003221008.1 recombinase RecA Machinery gene
  PT671_RS00880 cinA 262304..263554 (-) 1251 WP_003221005.1 competence/damage-inducible protein A Machinery gene
  PT671_RS00885 pgsA 263572..264153 (-) 582 WP_003221002.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PT671_RS00890 rodZ 264204..265118 (-) 915 WP_003221001.1 cell shape determination protein RodZ -
  PT671_RS00895 - 265137..265928 (-) 792 WP_003220998.1 DUF3388 domain-containing protein -
  PT671_RS00900 - 266058..266315 (-) 258 WP_003220996.1 DUF3243 domain-containing protein -
  PT671_RS00905 ymfI 266396..267124 (-) 729 WP_003220995.1 elongation factor P 5-aminopentanone reductase -
  PT671_RS00910 yfmH 267177..268463 (-) 1287 WP_003220993.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45541.88 Da        Isoelectric Point: 5.3857

>NTDB_id=789119 PT671_RS00880 WP_003221005.1 262304..263554(-) (cinA) [Bacillus spizizenii strain B-354]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANALGRPLVLNEEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGLTISAAESFTGGLFSEWLTDLSGASKRFAGGVVCYTNDVKQNVLG
VKKETLDQFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=789119 PT671_RS00880 WP_003221005.1 262304..263554(-) (cinA) [Bacillus spizizenii strain B-354]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAGATCGCTAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTGAACGTATTTTATCATACAGCAGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGTTCTGACTTCATTATCTTTTCAGGAGGTCTCGGACCGACAAAAGATGATTTG
ACGAAAGAAACGATTGCAAATGCGCTGGGACGTCCGCTTGTGTTAAATGAAGAGGCGTTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGATCTGACGTACTGGCAAATC
ACTTTGGAATGGCACCGGGAATGCTCACAGAGCATGAATCGCGCTTTTATATGCTTCTTCCTGGGCCGCCAAGCGAATTG
CGTCCCATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAAATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACCAACCCGACAATCG
CTCCATTGGCGGCAGATGGAGAGGTGACGCTGCGTCTGACAGCCAAGCATGCTGACGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCTGTTATTTTAGAACGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCCCTTGTAAAAGAGCT
TTCTAAAGCATGTAAGGAAAAAGGCCTTACGATTTCCGCGGCGGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAAAACGATTTGCCGGCGGCGTTGTTTGCTATACAAACGACGTGAAACAGAATGTGCTTGGC
GTCAAGAAGGAGACATTAGATCAATTTGGCGCGGTCAGCAAGGAGTGCGCATCAGAGCTGGCAAAGGGTGTTCAAAAGCT
CACTGGCAGCGACATCGGCATCAGCTTTACCGGTGTAGCAGGACCTGATACTCAAGAAGGGCATGAGCCTGGACATGTGT
TTATCGGTATTTCAGCAAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGTTCCAGAACGGGAATCAGAAAACGC
GGTGCTAAATACGGCTGTCATTTAATCTTGAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0TV16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

97.837

100

0.978
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.645

90.625

0.377