Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PQ472_RS08710 Genome accession   NZ_CP117884
Coordinates   1817241..1818308 (-) Length   355 a.a.
NCBI ID   WP_274259159.1    Uniprot ID   -
Organism   Lacticaseibacillus pabuli strain KACC 23028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1812241..1823308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ472_RS08695 (PQ472_08695) - 1813537..1814172 (+) 636 WP_274259154.1 YigZ family protein -
  PQ472_RS08700 (PQ472_08700) - 1814224..1815339 (-) 1116 WP_274259156.1 glycosyltransferase family 4 protein -
  PQ472_RS08705 (PQ472_08705) rny 1815474..1817027 (-) 1554 WP_419182031.1 ribonuclease Y -
  PQ472_RS08710 (PQ472_08710) recA 1817241..1818308 (-) 1068 WP_274259159.1 recombinase RecA Machinery gene
  PQ472_RS08715 (PQ472_08715) cinA 1818396..1819637 (-) 1242 WP_274259161.1 competence/damage-inducible protein A Machinery gene
  PQ472_RS08720 (PQ472_08720) pgsA 1819758..1820348 (-) 591 WP_274259163.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PQ472_RS08725 (PQ472_08725) - 1820364..1821389 (-) 1026 WP_274259165.1 helix-turn-helix domain-containing protein -
  PQ472_RS08730 (PQ472_08730) ymfI 1821484..1822209 (-) 726 WP_274259167.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38234.35 Da        Isoelectric Point: 5.3623

>NTDB_id=788280 PQ472_RS08710 WP_274259159.1 1817241..1818308(-) (recA) [Lacticaseibacillus pabuli strain KACC 23028]
MAKDERKAALDNALKKIEKNFGKGAIMRMGDKVDTRVSTVSSGSLALDEALGVGGFPRGRIVEVYGPESSGKTTLALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDDLLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVPKAEIDGDIG
DSHVGLQARLMSQALRKLSGQINRTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATIRLEVRRAEQIKDNGVVIGN
RTKIKVAKNKVAPPFRVAEVDIMYGHGISQTGELVDMAVDKDIINKSGSWYSYKEDRIGQGRENAKKYLADHPDFEADLR
KQVRTAYGMDGEGEADAEANGKLEESAPEDLFDKK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=788280 PQ472_RS08710 WP_274259159.1 1817241..1818308(-) (recA) [Lacticaseibacillus pabuli strain KACC 23028]
GTGGCTAAAGACGAACGTAAAGCGGCGCTAGATAACGCGCTCAAGAAGATTGAAAAGAACTTCGGTAAAGGCGCCATCAT
GCGGATGGGTGATAAAGTCGATACCCGTGTGTCGACCGTATCTAGTGGTTCGCTTGCACTTGATGAAGCACTCGGTGTCG
GTGGTTTTCCACGTGGACGAATTGTTGAGGTGTACGGGCCTGAAAGTTCAGGTAAGACGACCTTGGCATTGCACGCCGTC
GCTGAAGTCCAGAAGCAAGGCGGGACTGCAGCCTATATCGATGCTGAAAACGCGATGGATCCAAAATATGCCACCGCGCT
GGGTGTTAATATTGACGACTTGCTACTATCCCAGCCTGATACAGGTGAACAGGGCCTGGAAATTGCTGATGCCCTGGTGT
CTAGTGGTGCGATTGATATCGTGGTCATTGACTCCGTTGCTGCATTGGTGCCAAAGGCGGAAATTGATGGTGATATCGGG
GACTCACACGTTGGGCTCCAGGCACGTTTGATGTCACAGGCTTTGCGTAAGCTCTCCGGTCAAATTAACCGGACGAAGAC
CATCGCCATCTTTATCAACCAGATTCGTGAAAAAGTTGGGGTTATGTTTGGTAACCCTGAGACCACACCTGGTGGCCGTG
CCCTTAAGTTCTACGCAACGATTCGTCTTGAGGTTCGTCGTGCTGAACAAATCAAGGACAACGGTGTCGTGATTGGTAAC
CGGACGAAGATTAAGGTTGCCAAGAACAAGGTGGCCCCACCATTCCGTGTCGCAGAAGTTGATATTATGTATGGTCACGG
GATTTCCCAAACAGGGGAACTCGTCGATATGGCTGTGGACAAGGACATTATCAACAAGAGTGGTTCTTGGTACAGCTACA
AGGAAGACCGGATTGGGCAAGGACGTGAAAACGCCAAGAAATACTTGGCCGATCATCCAGACTTTGAGGCCGACTTGCGT
AAGCAGGTCCGGACCGCATACGGGATGGATGGCGAAGGTGAGGCGGATGCCGAAGCTAACGGTAAGCTTGAAGAATCTGC
GCCAGAAGACCTTTTCGATAAGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

84.226

94.648

0.797
  recA Bacillus subtilis subsp. subtilis str. 168

74.468

92.676

0.69
  recA Streptococcus pneumoniae D39

67.521

98.873

0.668
  recA Streptococcus pneumoniae R6

67.521

98.873

0.668
  recA Streptococcus pneumoniae Rx1

67.521

98.873

0.668
  recA Streptococcus pneumoniae TIGR4

67.521

98.873

0.668
  recA Streptococcus mitis SK321

69.322

95.493

0.662
  recA Streptococcus mutans UA159

67.723

97.746

0.662
  recA Streptococcus pyogenes NZ131

70.821

92.676

0.656
  recA Streptococcus mitis NCTC 12261

69.97

93.803

0.656
  recA Lactococcus lactis subsp. cremoris KW2

68.693

92.676

0.637
  recA Neisseria gonorrhoeae MS11

61.89

92.394

0.572
  recA Neisseria gonorrhoeae MS11

61.89

92.394

0.572
  recA Neisseria gonorrhoeae strain FA1090

61.89

92.394

0.572
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.468

92.113

0.566
  recA Acinetobacter baylyi ADP1

60.736

91.831

0.558
  recA Glaesserella parasuis strain SC1401

55.966

99.155

0.555
  recA Ralstonia pseudosolanacearum GMI1000

62.939

88.169

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

90.986

0.552
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.359

92.676

0.541
  recA Helicobacter pylori 26695

57.485

94.085

0.541
  recA Helicobacter pylori strain NCTC11637

57.485

94.085

0.541
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.813

90.423

0.541
  recA Vibrio cholerae strain A1552

59.813

90.423

0.541
  recA Acinetobacter baumannii D1279779

59.627

90.704

0.541
  recA Pseudomonas stutzeri DSM 10701

59.502

90.423

0.538