Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PQ472_RS08715 Genome accession   NZ_CP117884
Coordinates   1818396..1819637 (-) Length   413 a.a.
NCBI ID   WP_274259161.1    Uniprot ID   -
Organism   Lacticaseibacillus pabuli strain KACC 23028     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1813396..1824637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ472_RS08695 (PQ472_08695) - 1813537..1814172 (+) 636 WP_274259154.1 YigZ family protein -
  PQ472_RS08700 (PQ472_08700) - 1814224..1815339 (-) 1116 WP_274259156.1 glycosyltransferase family 4 protein -
  PQ472_RS08705 (PQ472_08705) rny 1815474..1817027 (-) 1554 WP_419182031.1 ribonuclease Y -
  PQ472_RS08710 (PQ472_08710) recA 1817241..1818308 (-) 1068 WP_274259159.1 recombinase RecA Machinery gene
  PQ472_RS08715 (PQ472_08715) cinA 1818396..1819637 (-) 1242 WP_274259161.1 competence/damage-inducible protein A Machinery gene
  PQ472_RS08720 (PQ472_08720) pgsA 1819758..1820348 (-) 591 WP_274259163.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PQ472_RS08725 (PQ472_08725) - 1820364..1821389 (-) 1026 WP_274259165.1 helix-turn-helix domain-containing protein -
  PQ472_RS08730 (PQ472_08730) ymfI 1821484..1822209 (-) 726 WP_274259167.1 elongation factor P 5-aminopentanone reductase -
  PQ472_RS08735 (PQ472_08735) yfmH 1822209..1823510 (-) 1302 WP_274259169.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 43900.20 Da        Isoelectric Point: 6.5056

>NTDB_id=788281 PQ472_RS08715 WP_274259161.1 1818396..1819637(-) (cinA) [Lacticaseibacillus pabuli strain KACC 23028]
MNAELIAVGTEILLGEITNTNGSYLARELSRIGVDSYFQQVVGDNPQRLDAAITTAEQRSDMIIVMGGLGPTPDDLSKQT
LAAHLGLKLVTDAAHLAKLHELAKRREHALTPNNLAQAQLPEGATPLTNHNGLAVGAMLKQGAHTYVLLPGPPREFVKMV
DTELLPLLAGQEHQLLISRTLRYFGLGESGLVDAIKDIIAQQTNPTVAPYIKDYEVTLRLTGRGDNEAVITKQLDALQDK
INAVLGKYYYATGADVTLASVVVHELVRQGQSVSAAESLTAGLFQATIGGVPGVSDVFNGGFVTYSAGAKAKLLGIAPEL
IAKHGVVSEETALAMAKGTRQRMQSDYAVSFTGVAGPDELEGHPAGTVWIGLSGPAGDQAQLFHLGGSRNEVRIRSVKHG
LMMLLRALQQAQK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=788281 PQ472_RS08715 WP_274259161.1 1818396..1819637(-) (cinA) [Lacticaseibacillus pabuli strain KACC 23028]
ATGAATGCGGAATTAATTGCTGTCGGGACGGAAATTTTACTCGGCGAGATTACAAATACGAATGGCAGTTATTTGGCTCG
TGAATTGAGTCGAATTGGTGTTGACAGCTATTTTCAGCAGGTCGTGGGTGATAACCCACAGCGCTTGGATGCCGCTATCA
CGACGGCTGAGCAGCGCAGTGACATGATTATTGTGATGGGTGGACTAGGGCCAACGCCAGATGATTTGAGCAAGCAGACC
TTGGCAGCACATTTGGGATTGAAACTAGTCACGGATGCGGCGCACTTAGCTAAATTGCATGAATTAGCTAAACGCCGCGA
ACACGCGTTGACGCCCAATAATCTGGCACAGGCCCAGTTGCCTGAGGGTGCCACGCCATTAACCAACCACAATGGACTGG
CAGTTGGTGCAATGCTCAAACAAGGGGCGCATACGTACGTCCTGTTGCCCGGACCACCCCGCGAGTTTGTCAAAATGGTG
GACACGGAGTTGTTGCCACTGCTGGCGGGTCAAGAACACCAGCTACTGATCAGCCGGACCCTGCGTTACTTTGGCTTGGG
CGAATCTGGCTTGGTGGACGCGATCAAGGATATCATTGCCCAGCAGACCAACCCGACCGTTGCACCGTACATCAAGGACT
ATGAGGTGACTCTGCGGCTAACTGGACGTGGTGATAACGAGGCAGTCATCACCAAGCAACTCGATGCATTGCAAGACAAA
ATCAACGCGGTGCTGGGCAAGTATTACTACGCGACGGGTGCGGATGTCACGTTGGCGAGTGTCGTGGTGCACGAATTAGT
GCGGCAGGGACAAAGTGTTAGTGCTGCGGAAAGCTTAACGGCGGGGCTGTTCCAGGCAACAATCGGTGGGGTGCCCGGCG
TATCCGATGTCTTTAACGGCGGCTTCGTCACGTATAGCGCGGGTGCAAAGGCCAAATTGCTGGGCATTGCGCCGGAACTG
ATTGCCAAACACGGGGTCGTTAGCGAAGAAACAGCCCTGGCGATGGCCAAGGGTACGCGTCAGCGAATGCAGAGTGACTA
CGCGGTTTCCTTCACGGGCGTTGCGGGTCCTGATGAGCTGGAAGGCCATCCTGCCGGCACGGTTTGGATTGGACTCAGCG
GTCCTGCAGGCGATCAGGCGCAACTCTTCCACTTGGGTGGCAGTCGCAATGAGGTACGGATTCGCAGTGTGAAGCACGGG
CTGATGATGCTATTGCGCGCGTTGCAACAAGCTCAAAAATAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-407)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-251)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.478

100

0.511
  cinA Streptococcus mitis NCTC 12261

50.239

100

0.508
  cinA Streptococcus pneumoniae Rx1

50

100

0.506
  cinA Streptococcus pneumoniae R6

50

100

0.506
  cinA Streptococcus pneumoniae TIGR4

50

100

0.506
  cinA Streptococcus pneumoniae D39

49.761

100

0.504
  cinA Streptococcus mutans UA159

48.544

99.758

0.484
  cinA Bacillus subtilis subsp. subtilis str. 168

41.606

99.516

0.414
  cinA Streptococcus suis isolate S10

41.282

94.431

0.39