Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PQ478_RS13510 Genome accession   NZ_CP117835
Coordinates   2518362..2519411 (-) Length   349 a.a.
NCBI ID   WP_012959317.1    Uniprot ID   -
Organism   Alkalihalophilus pseudofirmus strain DSM 8715     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2513362..2524411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ478_RS13490 (PQ478_13490) - 2514876..2515553 (-) 678 WP_289234598.1 ATP-binding protein -
  PQ478_RS13495 (PQ478_13495) - 2515546..2515797 (-) 252 WP_012959314.1 hypothetical protein -
  PQ478_RS13500 (PQ478_13500) - 2515812..2517239 (-) 1428 WP_289234599.1 AAA family ATPase -
  PQ478_RS13505 (PQ478_13505) - 2517232..2518224 (-) 993 WP_075682691.1 exonuclease SbcCD subunit D -
  PQ478_RS13510 (PQ478_13510) recA 2518362..2519411 (-) 1050 WP_012959317.1 recombinase RecA Machinery gene
  PQ478_RS13515 (PQ478_13515) - 2519648..2521267 (-) 1620 WP_012959318.1 DEAD/DEAH box helicase -
  PQ478_RS13520 (PQ478_13520) cinA 2521267..2522517 (-) 1251 WP_289234600.1 competence/damage-inducible protein A Machinery gene
  PQ478_RS13525 (PQ478_13525) pgsA 2522531..2523109 (-) 579 WP_289234601.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PQ478_RS13530 (PQ478_13530) - 2523145..2523639 (-) 495 WP_012959321.1 YajQ family cyclic di-GMP-binding protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37819.11 Da        Isoelectric Point: 5.0820

>NTDB_id=787847 PQ478_RS13510 WP_012959317.1 2518362..2519411(-) (recA) [Alkalihalophilus pseudofirmus strain DSM 8715]
MGDRKAALDMALRQIEKQFGKGSIMKLGEQVDQRVSTVSSGALALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
IQRNGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
KIKVVKNKVAPPFRQAEVDIMYGEGISREGSILDIAADLDIVLKSGAWYSFKEERLGQGRENSKQYLKENPDVASEIETL
IRDHHGLNGEIKVDPATDEEFEDVPLDLK

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=787847 PQ478_RS13510 WP_012959317.1 2518362..2519411(-) (recA) [Alkalihalophilus pseudofirmus strain DSM 8715]
ATGGGTGATCGTAAAGCAGCTCTTGATATGGCGCTTCGCCAAATCGAAAAGCAATTTGGTAAAGGTTCAATTATGAAATT
AGGAGAGCAAGTCGATCAACGTGTATCAACTGTATCCAGTGGTGCGCTGGCACTTGATATTGCACTAGGAGTAGGCGGGT
ATCCTCGCGGCCGTATTATTGAAGTGTACGGACCAGAATCATCTGGTAAAACGACGGTTGCTTTGCATGCAATTGCTGAA
ATTCAGCGTAACGGCGGCCAAGCGGCATTTATTGATGCAGAGCATGCGCTTGATCCGGTTTATGCTCAGAAACTTGGAGT
CAATATTGATGAATTGCTATTATCACAGCCGGACACAGGTGAGCAAGCTCTTGAAATTGCAGAAGCATTAGTGCGCAGCG
GAGCAGTTGATATGATCGTCATAGATAGTGTGGCGGCTCTTGTGCCAAAAGCAGAAATCGAAGGGGATATGGGAGACAGC
CACGTTGGTCTGCAGGCTAGACTTATGTCTCAAGCTCTTCGTAAATTATCAGGAGCAATTAATAAGTCGAAGACGATTGC
TGTATTTATTAACCAGATCCGTGAAAAAGTAGGGGTTATGTTTGGGAACCCAGAAACAACACCAGGAGGCCGTGCACTGA
AGTTCTATTCTTCTGTCCGCCTTGAGGTGCGCCGTGCAGAAACGTTGAAGCAGGGTAACGATATGGTCGGTAATAAAACG
AAGATTAAAGTAGTTAAAAATAAAGTAGCGCCACCATTTAGACAAGCAGAAGTAGATATTATGTACGGAGAAGGGATCTC
ACGCGAAGGTTCTATCTTAGACATTGCTGCAGATCTTGATATTGTTCTAAAAAGCGGAGCATGGTATTCTTTTAAAGAGG
AGCGTCTTGGTCAAGGCCGGGAAAATTCTAAGCAATATTTAAAAGAAAACCCTGATGTTGCTTCTGAAATTGAAACGCTT
ATTCGTGATCATCACGGGTTAAACGGAGAAATAAAAGTAGACCCAGCTACTGATGAAGAATTTGAAGATGTACCATTAGA
CTTAAAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.671

93.983

0.805
  recA Latilactobacillus sakei subsp. sakei 23K

71.758

99.427

0.713
  recA Streptococcus pneumoniae D39

66.759

100

0.691
  recA Streptococcus pneumoniae R6

66.759

100

0.691
  recA Streptococcus pneumoniae TIGR4

66.759

100

0.691
  recA Streptococcus pneumoniae Rx1

66.759

100

0.691
  recA Streptococcus mitis SK321

67.227

100

0.688
  recA Streptococcus mitis NCTC 12261

66.947

100

0.685
  recA Streptococcus pyogenes NZ131

66.289

100

0.67
  recA Streptococcus mutans UA159

68.085

94.269

0.642
  recA Lactococcus lactis subsp. cremoris KW2

67.781

94.269

0.639
  recA Neisseria gonorrhoeae strain FA1090

64.012

97.135

0.622
  recA Neisseria gonorrhoeae MS11

64.012

97.135

0.622
  recA Neisseria gonorrhoeae MS11

64.012

97.135

0.622
  recA Acinetobacter baumannii D1279779

60.345

99.713

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.333

94.556

0.599
  recA Ralstonia pseudosolanacearum GMI1000

65.924

89.971

0.593
  recA Glaesserella parasuis strain SC1401

63.692

93.123

0.593
  recA Helicobacter pylori 26695

60.058

98.281

0.59
  recA Helicobacter pylori strain NCTC11637

60.058

98.281

0.59
  recA Acinetobacter baylyi ADP1

62.769

93.123

0.585
  recA Vibrio cholerae strain A1552

63.551

91.977

0.585
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.551

91.977

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

93.696

0.582
  recA Pseudomonas stutzeri DSM 10701

63.438

91.691

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.658

90.544

0.567