Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PQ478_RS13520 Genome accession   NZ_CP117835
Coordinates   2521267..2522517 (-) Length   416 a.a.
NCBI ID   WP_289234600.1    Uniprot ID   -
Organism   Alkalihalophilus pseudofirmus strain DSM 8715     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2516267..2527517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ478_RS13505 (PQ478_13505) - 2517232..2518224 (-) 993 WP_075682691.1 exonuclease SbcCD subunit D -
  PQ478_RS13510 (PQ478_13510) recA 2518362..2519411 (-) 1050 WP_012959317.1 recombinase RecA Machinery gene
  PQ478_RS13515 (PQ478_13515) - 2519648..2521267 (-) 1620 WP_012959318.1 DEAD/DEAH box helicase -
  PQ478_RS13520 (PQ478_13520) cinA 2521267..2522517 (-) 1251 WP_289234600.1 competence/damage-inducible protein A Machinery gene
  PQ478_RS13525 (PQ478_13525) pgsA 2522531..2523109 (-) 579 WP_289234601.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PQ478_RS13530 (PQ478_13530) - 2523145..2523639 (-) 495 WP_012959321.1 YajQ family cyclic di-GMP-binding protein -
  PQ478_RS13535 (PQ478_13535) - 2523846..2524748 (-) 903 WP_289234602.1 RodZ family helix-turn-helix domain-containing protein -
  PQ478_RS13540 (PQ478_13540) - 2524770..2525537 (-) 768 WP_012959323.1 DUF3388 domain-containing protein -
  PQ478_RS13545 (PQ478_13545) - 2525823..2526074 (-) 252 WP_012959324.1 DUF3243 domain-containing protein -
  PQ478_RS13550 (PQ478_13550) - 2526148..2526870 (-) 723 WP_289234603.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45478.18 Da        Isoelectric Point: 5.6683

>NTDB_id=787848 PQ478_RS13520 WP_289234600.1 2521267..2522517(-) (cinA) [Alkalihalophilus pseudofirmus strain DSM 8715]
MKAEIIAVGSELLLGQIVNSNAAFLSVELAQHGIDVFYHVVVGDNEERLTDVLNQASKRSDLVILTGGLGPTKDDLTKET
VAEICGKDLVYHQQSLDAITSFFEKRGQVMTENNKKQALVIEDSHVLVNHNGMAPGMVLETDQCKFVLLPGPPKEMQPMV
VSELRPLLEKDNVTQEKITSRVLRFFGIGESKLAAMIDDLLVNQTNPTIAPLASEGEVTLRLTVKHYDPNVSVQLLDQVE
KDILSRVGEYFYGYGETTLMEVVSKQLKKHKYYIAAAESLTGGLFSSALTSISGASEIFHGSIISYATKVKENNLGVPNK
IIAENGVVSAECAVEMAKAVKLKLQSDIGISFTGVAGPGTQDGRKPGEVYVGICGPNNEVAVHKLKLSGNREAIRQRTIN
YGCFYLLNELKRWNIE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=787848 PQ478_RS13520 WP_289234600.1 2521267..2522517(-) (cinA) [Alkalihalophilus pseudofirmus strain DSM 8715]
ATGAAAGCGGAAATTATTGCCGTTGGTTCCGAATTATTACTTGGCCAGATCGTGAACTCAAATGCTGCTTTCTTATCCGT
GGAACTAGCTCAGCATGGAATTGATGTATTTTATCATGTTGTGGTTGGTGATAACGAAGAACGGTTGACTGACGTTCTCA
ACCAAGCTTCTAAGAGATCTGATTTGGTTATATTAACTGGCGGGCTAGGTCCCACTAAAGATGACTTAACGAAAGAAACC
GTTGCTGAGATCTGCGGGAAAGATCTTGTGTATCACCAACAATCGTTAGATGCTATTACTTCTTTCTTTGAAAAAAGAGG
GCAGGTCATGACGGAAAATAACAAAAAACAGGCGCTTGTCATTGAAGACAGCCATGTATTGGTTAATCATAATGGAATGG
CGCCTGGAATGGTTTTGGAGACCGATCAATGTAAGTTTGTCTTGCTGCCCGGCCCTCCAAAAGAAATGCAGCCAATGGTG
GTGTCTGAATTAAGACCGCTGCTTGAGAAAGACAATGTGACACAGGAGAAAATTACATCCCGAGTCCTCAGGTTTTTTGG
GATAGGCGAATCCAAATTAGCAGCAATGATTGATGATTTGCTTGTCAACCAAACCAACCCTACGATTGCACCTCTTGCTA
GCGAGGGTGAGGTTACTTTGCGGCTGACAGTCAAACATTATGACCCAAACGTAAGTGTCCAGCTTCTTGATCAAGTAGAA
AAAGACATCCTTTCTCGTGTCGGAGAATATTTTTATGGGTACGGTGAGACAACGTTAATGGAAGTCGTATCTAAGCAGCT
TAAAAAACATAAGTACTATATTGCGGCTGCAGAAAGTTTAACGGGAGGCCTTTTCTCAAGTGCACTCACTTCCATTTCAG
GAGCCTCTGAAATTTTTCATGGAAGTATTATTTCTTACGCAACAAAAGTGAAGGAAAATAATTTAGGTGTACCGAATAAA
ATTATTGCTGAAAACGGAGTGGTAAGTGCAGAATGTGCCGTGGAAATGGCTAAAGCTGTTAAACTGAAGCTTCAATCAGA
TATTGGGATCAGTTTCACAGGCGTTGCTGGACCTGGTACACAAGATGGTAGAAAGCCTGGAGAAGTTTATGTCGGAATAT
GCGGCCCGAACAATGAGGTGGCCGTACATAAGTTAAAACTAAGCGGCAACAGAGAAGCCATTCGTCAGAGGACGATAAAC
TATGGTTGTTTTTATTTGTTGAACGAACTGAAAAGGTGGAATATAGAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.771

98.798

0.531
  cinA Streptococcus pneumoniae TIGR4

47.264

96.635

0.457
  cinA Streptococcus pneumoniae Rx1

47.015

96.635

0.454
  cinA Streptococcus pneumoniae R6

47.015

96.635

0.454
  cinA Streptococcus mutans UA159

47.118

95.913

0.452
  cinA Streptococcus mitis SK321

49.086

92.067

0.452
  cinA Streptococcus pneumoniae D39

46.766

96.635

0.452
  cinA Streptococcus mitis NCTC 12261

48.564

92.067

0.447
  cinA Streptococcus suis isolate S10

39.401

96.394

0.38