Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PQ477_RS19805 Genome accession   NZ_CP117834
Coordinates   3862263..3863312 (-) Length   349 a.a.
NCBI ID   WP_035397273.1    Uniprot ID   -
Organism   Shouchella hunanensis strain DSM 23008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3857263..3868312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ477_RS19785 (PQ477_19785) - 3858838..3859506 (-) 669 WP_035397279.1 ATPase -
  PQ477_RS19790 (PQ477_19790) - 3859499..3859750 (-) 252 WP_035397277.1 DUF2203 family protein -
  PQ477_RS19795 (PQ477_19795) - 3859747..3861180 (-) 1434 WP_274273603.1 AAA family ATPase -
  PQ477_RS19800 (PQ477_19800) - 3861167..3862156 (-) 990 WP_052008199.1 metallophosphoesterase -
  PQ477_RS19805 (PQ477_19805) recA 3862263..3863312 (-) 1050 WP_035397273.1 recombinase RecA Machinery gene
  PQ477_RS19810 (PQ477_19810) - 3863501..3865117 (-) 1617 WP_035397271.1 DEAD/DEAH box helicase -
  PQ477_RS19815 (PQ477_19815) cinA 3865114..3866367 (-) 1254 WP_144559150.1 competence/damage-inducible protein A Machinery gene
  PQ477_RS19820 (PQ477_19820) pgsA 3866379..3866957 (-) 579 WP_035397270.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PQ477_RS19825 (PQ477_19825) - 3867077..3867976 (-) 900 WP_144559151.1 RodZ family helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37899.14 Da        Isoelectric Point: 5.1129

>NTDB_id=787828 PQ477_RS19805 WP_035397273.1 3862263..3863312(-) (recA) [Shouchella hunanensis strain DSM 23008]
MSDRKQALDMALRQIEKQFGKGSVMKLGERAEQRISTVSSGALALDIALGVGGYPKGRVIEVYGPESSGKTTVALHAIAE
VQRQGGQAAFIDAEHALDPVYAGKLGVNVDELLLSQPDTGEQALEIAEALVRSGALDMIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTVAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKQGNDIVGNRT
KIKVVKNKVAPPFRLAEVDIMYGEGISREGSILDIATDLEIVDKSGAWYSYNGDRLGQGRENSKQFLKENVEITAEIERK
IRDEHNLDGEVKVEEADKESFEDVPLDLK

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=787828 PQ477_RS19805 WP_035397273.1 3862263..3863312(-) (recA) [Shouchella hunanensis strain DSM 23008]
ATGAGTGATCGGAAACAAGCGTTAGATATGGCCTTACGCCAGATCGAAAAGCAGTTTGGTAAAGGTTCTGTCATGAAATT
AGGAGAGAGAGCGGAGCAACGAATCTCAACCGTTTCAAGTGGTGCACTAGCTTTAGATATTGCTTTAGGTGTTGGTGGCT
ATCCAAAAGGTAGAGTTATTGAAGTTTACGGACCAGAGTCTTCTGGTAAAACGACAGTTGCTCTTCACGCTATTGCTGAA
GTACAACGTCAAGGTGGTCAAGCTGCATTTATTGATGCAGAGCACGCTTTAGACCCTGTTTATGCTGGTAAACTTGGTGT
AAATGTAGACGAATTGCTTCTGTCTCAACCTGACACAGGCGAACAAGCATTAGAAATCGCTGAGGCGCTTGTACGAAGTG
GCGCTCTGGATATGATTGTTATTGATAGTGTCGCTGCTCTTGTTCCGAAAGCAGAGATTGAAGGCGAAATGGGAGATTCT
CACGTCGGCTTGCAGGCTCGTTTGATGTCGCAAGCGTTAAGAAAACTATCTGGCGCAATTAACAAATCGAAAACCGTAGC
GGTCTTTATCAATCAAATTCGTGAAAAAGTCGGCGTGATGTTCGGAAACCCCGAAACAACTCCAGGTGGACGTGCGCTTA
AGTTCTATTCTTCTGTTCGTTTAGAAGTGCGACGGGCTGAGGCACTGAAACAAGGAAACGATATTGTCGGAAACCGTACC
AAAATTAAAGTAGTGAAAAACAAAGTAGCGCCTCCATTCCGCCTTGCTGAAGTGGATATTATGTATGGCGAAGGAATTTC
AAGAGAAGGATCCATTCTTGATATTGCTACGGATTTAGAGATTGTGGATAAGAGTGGTGCGTGGTATTCTTACAACGGTG
ATCGCTTAGGTCAAGGTCGTGAGAACTCGAAACAATTCCTAAAAGAAAACGTGGAGATTACAGCTGAAATCGAACGGAAA
ATTCGTGATGAGCACAATCTTGATGGAGAAGTAAAAGTAGAAGAAGCTGATAAAGAATCTTTTGAAGATGTTCCTCTAGA
TTTAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.232

93.983

0.782
  recA Streptococcus pneumoniae R6

65.289

100

0.679
  recA Streptococcus pneumoniae Rx1

65.289

100

0.679
  recA Streptococcus pneumoniae D39

65.289

100

0.679
  recA Streptococcus pneumoniae TIGR4

65.289

100

0.679
  recA Latilactobacillus sakei subsp. sakei 23K

67.919

99.14

0.673
  recA Streptococcus mitis SK321

65.363

100

0.67
  recA Streptococcus mitis NCTC 12261

65.363

100

0.67
  recA Streptococcus mutans UA159

68.249

96.562

0.659
  recA Lactococcus lactis subsp. cremoris KW2

66.667

96.275

0.642
  recA Streptococcus pyogenes NZ131

69.136

92.837

0.642
  recA Glaesserella parasuis strain SC1401

61.808

98.281

0.607
  recA Neisseria gonorrhoeae MS11

66.044

91.977

0.607
  recA Neisseria gonorrhoeae MS11

66.044

91.977

0.607
  recA Neisseria gonorrhoeae strain FA1090

66.044

91.977

0.607
  recA Ralstonia pseudosolanacearum GMI1000

67.524

89.112

0.602
  recA Pseudomonas stutzeri DSM 10701

65

91.691

0.596
  recA Acinetobacter baumannii D1279779

61.607

96.275

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.424

96.562

0.593
  recA Acinetobacter baylyi ADP1

63.385

93.123

0.59
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

91.977

0.587
  recA Vibrio cholerae strain A1552

63.863

91.977

0.587
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.28

93.983

0.576
  recA Helicobacter pylori strain NCTC11637

62.112

92.264

0.573
  recA Helicobacter pylori 26695

61.801

92.264

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.627

92.264

0.55