Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PQ477_RS19815 Genome accession   NZ_CP117834
Coordinates   3865114..3866367 (-) Length   417 a.a.
NCBI ID   WP_144559150.1    Uniprot ID   -
Organism   Shouchella hunanensis strain DSM 23008     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3860114..3871367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQ477_RS19800 (PQ477_19800) - 3861167..3862156 (-) 990 WP_052008199.1 metallophosphoesterase -
  PQ477_RS19805 (PQ477_19805) recA 3862263..3863312 (-) 1050 WP_035397273.1 recombinase RecA Machinery gene
  PQ477_RS19810 (PQ477_19810) - 3863501..3865117 (-) 1617 WP_035397271.1 DEAD/DEAH box helicase -
  PQ477_RS19815 (PQ477_19815) cinA 3865114..3866367 (-) 1254 WP_144559150.1 competence/damage-inducible protein A Machinery gene
  PQ477_RS19820 (PQ477_19820) pgsA 3866379..3866957 (-) 579 WP_035397270.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PQ477_RS19825 (PQ477_19825) - 3867077..3867976 (-) 900 WP_144559151.1 RodZ family helix-turn-helix domain-containing protein -
  PQ477_RS19830 (PQ477_19830) - 3867998..3868765 (-) 768 WP_035397296.1 DUF3388 domain-containing protein -
  PQ477_RS19835 (PQ477_19835) - 3868924..3869172 (-) 249 WP_035397267.1 DUF3243 domain-containing protein -
  PQ477_RS19840 (PQ477_19840) - 3869243..3869956 (-) 714 WP_060704018.1 SDR family oxidoreductase -
  PQ477_RS19845 (PQ477_19845) - 3869953..3871248 (-) 1296 WP_035397265.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45396.70 Da        Isoelectric Point: 5.1960

>NTDB_id=787829 PQ477_RS19815 WP_144559150.1 3865114..3866367(-) (cinA) [Shouchella hunanensis strain DSM 23008]
MNAEIIAVGSELLLGQIANTNGQYISKQLASVGVDVYSHTVVGDNADRLYKTISEGFARADLLILTGGLGPTKDDLTKDT
VAKFCERELVYDQNALDHIEAYFKRHNRTMTPNNKKQAYVIEGAHVLANRHGMAPGMVVQLADEKRIVLLPGPPSEMKPM
FEKEFLPVLLGTNDQASITSRVLHFFGIGESQLETDLEDLIENQQNPTIAPLASDGEVKLRLTVKHTDKNEIKRLLDETE
SLITDRVGDYLYGYDETTLVKEVSRYLHEQGLTVASAESLTGGLFASELVALPGASSILTGSITAYTEEAKIALLGVSPQ
TLQDYGAVSEACAAEMAQGIQKKLRTDVAISFTGVAGPEKQGNLEPGTVVIGIAFPQQPVRTIPLSLSGGRNAVRMRAVK
YGFFYLLDELKRRNGSK

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=787829 PQ477_RS19815 WP_144559150.1 3865114..3866367(-) (cinA) [Shouchella hunanensis strain DSM 23008]
ATGAACGCGGAAATCATTGCTGTTGGTTCAGAGTTGTTGCTTGGCCAAATTGCCAACACAAATGGGCAATACATTTCGAA
ACAACTTGCAAGTGTTGGTGTTGACGTTTATTCACATACAGTGGTTGGTGATAATGCGGATCGACTGTATAAGACGATCA
GTGAAGGGTTTGCTCGTGCGGATTTGCTTATTTTAACGGGTGGGTTAGGCCCGACTAAAGATGATTTAACAAAAGATACG
GTTGCAAAGTTTTGTGAACGCGAGCTTGTGTATGACCAAAATGCTCTTGATCATATTGAAGCATATTTTAAGCGACACAA
TCGGACGATGACACCAAATAATAAAAAGCAAGCATACGTTATAGAAGGTGCTCATGTTCTTGCTAATCGTCATGGTATGG
CACCAGGAATGGTTGTTCAACTAGCTGATGAAAAAAGAATCGTTTTATTACCAGGACCGCCAAGTGAAATGAAACCTATG
TTTGAAAAAGAGTTTTTACCTGTCTTATTAGGAACAAACGATCAAGCGTCTATTACGTCGCGCGTGCTTCATTTTTTTGG
TATCGGTGAATCCCAACTTGAAACGGATCTAGAAGATCTTATTGAGAATCAGCAAAACCCTACAATTGCACCACTTGCAA
GTGACGGTGAAGTGAAGTTAAGGTTGACGGTGAAGCATACCGACAAAAATGAAATTAAGCGATTACTTGATGAAACAGAG
TCTTTGATTACAGATCGAGTAGGAGATTATCTGTACGGCTATGATGAGACAACGCTCGTTAAAGAAGTTTCTCGTTACTT
ACATGAACAAGGTCTTACTGTTGCCAGTGCGGAAAGCCTTACAGGCGGATTATTTGCCAGTGAACTCGTTGCCTTACCAG
GCGCATCATCGATCTTAACAGGAAGTATTACGGCTTATACAGAAGAAGCTAAAATCGCGTTACTCGGTGTATCTCCACAA
ACCCTCCAAGATTACGGGGCAGTGAGTGAAGCATGTGCAGCAGAAATGGCTCAAGGAATTCAAAAAAAACTACGAACCGA
TGTAGCCATCTCTTTTACCGGAGTAGCAGGACCAGAAAAACAAGGGAACCTAGAGCCAGGAACGGTTGTAATTGGCATTG
CCTTCCCACAACAACCTGTACGAACCATTCCACTTTCGTTATCTGGTGGGAGAAACGCCGTACGAATGCGTGCGGTTAAG
TATGGATTTTTCTATTTGTTGGACGAATTAAAAAGGAGAAATGGTAGTAAATGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

55.422

99.52

0.552
  cinA Streptococcus mutans UA159

46.098

98.321

0.453
  cinA Streptococcus mitis NCTC 12261

45.763

99.041

0.453
  cinA Streptococcus pneumoniae TIGR4

45.521

99.041

0.451
  cinA Streptococcus mitis SK321

45.278

99.041

0.448
  cinA Streptococcus pneumoniae Rx1

45.278

99.041

0.448
  cinA Streptococcus pneumoniae R6

45.278

99.041

0.448
  cinA Streptococcus pneumoniae D39

45.036

99.041

0.446
  cinA Streptococcus suis isolate S10

40.682

91.367

0.372