Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PSR47_RS06020 Genome accession   NZ_CP117687
Coordinates   1234444..1235532 (-) Length   362 a.a.
NCBI ID   WP_046921127.1    Uniprot ID   -
Organism   Ligilactobacillus ruminis strain CACC881     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1229444..1240532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR47_RS06000 (PSR47_06000) - 1229921..1230490 (-) 570 WP_022280690.1 anthranilate synthase component II -
  PSR47_RS06005 (PSR47_06005) - 1230474..1231970 (-) 1497 WP_022280689.1 anthranilate synthase component I family protein -
  PSR47_RS06010 (PSR47_06010) - 1232107..1232343 (-) 237 WP_014073291.1 hypothetical protein -
  PSR47_RS06015 (PSR47_06015) rny 1232555..1234120 (-) 1566 WP_273746850.1 ribonuclease Y -
  PSR47_RS06020 (PSR47_06020) recA 1234444..1235532 (-) 1089 WP_046921127.1 recombinase RecA Machinery gene
  PSR47_RS06025 (PSR47_06025) cinA 1235650..1236888 (-) 1239 WP_273746851.1 competence/damage-inducible protein A Machinery gene
  PSR47_RS06030 (PSR47_06030) pgsA 1237032..1237619 (-) 588 WP_039121062.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PSR47_RS06035 (PSR47_06035) - 1237670..1238557 (-) 888 WP_022280687.1 helix-turn-helix domain-containing protein -
  PSR47_RS06040 (PSR47_06040) ymfI 1238662..1239390 (-) 729 WP_080926539.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 39173.62 Da        Isoelectric Point: 5.9391

>NTDB_id=786943 PSR47_RS06020 WP_046921127.1 1234444..1235532(-) (recA) [Ligilactobacillus ruminis strain CACC881]
MSDDRKAALDNALKKIEKNFGKGSIMRMGDKADTRISTVPTGSLSLDEALGVGGFPRGRIVEIYGPESSGKTTVALHAVA
EVQKRGGTAAYIDAENALDPAYAQALGVNIDELLLSQPDTGEQGLEICDALVSSGAIDIVVVDSVAALVPRAEIEGEMGD
THVGLQARLMSQALRKLSGTINKTKTIALFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQIKDGSDIIGNR
VRIKVVKNKVAPPFKTAEVDIMYGEGISKTGELIDMAVEKEIVKKSGSWFSYGEERIGQGRENAKKYMKEHPDIMEEVTK
KVRAAYGIDDKQDDEPLELKTDDDKGTKSAAKSAKKVEDSTK

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=786943 PSR47_RS06020 WP_046921127.1 1234444..1235532(-) (recA) [Ligilactobacillus ruminis strain CACC881]
GTGAGCGACGATAGAAAAGCGGCATTAGATAATGCTCTTAAGAAAATTGAAAAAAATTTTGGCAAAGGCTCCATTATGAG
GATGGGCGATAAAGCTGATACCAGGATTTCGACCGTGCCAACTGGCTCGCTTTCGTTGGATGAAGCGTTGGGAGTCGGTG
GTTTCCCACGTGGGAGGATTGTTGAAATCTACGGTCCTGAAAGTTCTGGTAAGACAACTGTTGCATTGCATGCAGTTGCT
GAAGTTCAAAAACGAGGCGGAACTGCAGCTTACATTGATGCTGAAAATGCTCTTGATCCTGCTTATGCACAGGCATTGGG
TGTTAATATCGATGAATTATTGCTGTCGCAGCCTGACACGGGAGAACAGGGACTTGAGATTTGTGACGCATTGGTTTCAT
CCGGTGCGATTGACATAGTTGTTGTCGATTCGGTCGCTGCTTTGGTTCCACGAGCAGAAATTGAAGGCGAAATGGGCGAT
ACGCACGTGGGATTGCAAGCACGTTTGATGTCGCAGGCTTTACGAAAACTTTCCGGCACAATCAATAAAACCAAGACGAT
TGCTTTGTTCATAAACCAGATTCGTGAAAAGGTCGGCGTCATGTTTGGCAATCCTGAGACAACTCCTGGCGGTCGTGCAT
TGAAGTTTTATTCGACGGTACGTTTAGAAGTGCGCCGTGCTGAACAGATCAAGGACGGATCAGATATTATTGGAAATCGT
GTTCGTATCAAGGTTGTCAAAAATAAGGTTGCGCCTCCGTTCAAGACGGCTGAAGTTGACATCATGTATGGTGAAGGGAT
TTCCAAGACCGGTGAATTGATTGATATGGCAGTTGAAAAAGAAATTGTCAAGAAGAGCGGTTCGTGGTTCTCATATGGTG
AAGAACGCATTGGTCAAGGGCGTGAAAACGCAAAGAAATACATGAAAGAACATCCGGATATCATGGAAGAAGTTACGAAG
AAAGTCAGAGCAGCATACGGAATTGATGATAAGCAGGATGATGAGCCGCTTGAATTGAAAACTGATGATGACAAAGGGAC
AAAGTCGGCTGCTAAATCAGCAAAAAAAGTTGAAGACAGTACAAAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.184

96.133

0.79
  recA Bacillus subtilis subsp. subtilis str. 168

77.982

90.331

0.704
  recA Streptococcus pneumoniae D39

67.241

96.133

0.646
  recA Streptococcus pneumoniae R6

67.241

96.133

0.646
  recA Streptococcus pneumoniae Rx1

67.241

96.133

0.646
  recA Streptococcus pneumoniae TIGR4

67.241

96.133

0.646
  recA Streptococcus mutans UA159

64.888

98.343

0.638
  recA Lactococcus lactis subsp. cremoris KW2

69.486

91.436

0.635
  recA Streptococcus mitis SK321

66.86

95.028

0.635
  recA Streptococcus pyogenes NZ131

68.58

91.436

0.627
  recA Streptococcus mitis NCTC 12261

67.964

92.265

0.627
  recA Neisseria gonorrhoeae strain FA1090

64.242

91.16

0.586
  recA Neisseria gonorrhoeae MS11

64.242

91.16

0.586
  recA Neisseria gonorrhoeae MS11

64.242

91.16

0.586
  recA Ralstonia pseudosolanacearum GMI1000

61.128

93.094

0.569
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.706

93.923

0.561
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

89.227

0.558
  recA Vibrio cholerae strain A1552

62.539

89.227

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

89.227

0.555
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.28

90.608

0.555
  recA Glaesserella parasuis strain SC1401

62.305

88.674

0.552
  recA Helicobacter pylori 26695

57.895

94.475

0.547
  recA Helicobacter pylori strain NCTC11637

57.895

94.475

0.547
  recA Pseudomonas stutzeri DSM 10701

60.494

89.503

0.541
  recA Acinetobacter baylyi ADP1

60.372

89.227

0.539
  recA Acinetobacter baumannii D1279779

59.752

89.227

0.533