Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PSR47_RS06025 Genome accession   NZ_CP117687
Coordinates   1235650..1236888 (-) Length   412 a.a.
NCBI ID   WP_273746851.1    Uniprot ID   -
Organism   Ligilactobacillus ruminis strain CACC881     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1230650..1241888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSR47_RS06010 (PSR47_06010) - 1232107..1232343 (-) 237 WP_014073291.1 hypothetical protein -
  PSR47_RS06015 (PSR47_06015) rny 1232555..1234120 (-) 1566 WP_273746850.1 ribonuclease Y -
  PSR47_RS06020 (PSR47_06020) recA 1234444..1235532 (-) 1089 WP_046921127.1 recombinase RecA Machinery gene
  PSR47_RS06025 (PSR47_06025) cinA 1235650..1236888 (-) 1239 WP_273746851.1 competence/damage-inducible protein A Machinery gene
  PSR47_RS06030 (PSR47_06030) pgsA 1237032..1237619 (-) 588 WP_039121062.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PSR47_RS06035 (PSR47_06035) - 1237670..1238557 (-) 888 WP_022280687.1 helix-turn-helix domain-containing protein -
  PSR47_RS06040 (PSR47_06040) ymfI 1238662..1239390 (-) 729 WP_080926539.1 elongation factor P 5-aminopentanone reductase -
  PSR47_RS06045 (PSR47_06045) yfmH 1239387..1240691 (-) 1305 WP_046921131.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45419.37 Da        Isoelectric Point: 4.7909

>NTDB_id=786944 PSR47_RS06025 WP_273746851.1 1235650..1236888(-) (cinA) [Ligilactobacillus ruminis strain CACC881]
MHAEVISVGTEILLGQITDTNSTFISQRLAELGIDVYFKTVVGDNEKRLLQALEIASGRSDIVILSGGLGPTKDDLTKQT
VAKFLNCGLLTDKDALEYIEEYYRQNKRKMTDNNLLQAKYLEGSFSLPNESGMAVGSYYQNPNGPDFILLPGPPSEMRPM
FDKQVMHRLKENYAREHLLFSRVLRFYGIGESQLVTELDDLINGQTNPTIAPYAKVGEVTLRLTAQADSKESAKEILDEA
EQVISKRVGQYLYGYGDDNSLPKVVVEKLKQKGLTVSASESLTGGSFQKAVTDIAGSSHIFPGGFVTYSASAKENLLDIP
KEIIIENGVVSEATAKWMAERTRIKMDTDFGVSFTGVAGPDTLEGNPAGTVWIGISQRDRQTAAFEYHFYGDRDAVRIRS
VLAGFDLINNEL

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=786944 PSR47_RS06025 WP_273746851.1 1235650..1236888(-) (cinA) [Ligilactobacillus ruminis strain CACC881]
ATGCATGCAGAAGTTATTTCGGTCGGAACAGAAATTTTGTTAGGCCAAATTACGGATACAAACTCGACTTTTATCAGCCA
ACGCTTGGCCGAACTGGGGATTGACGTTTATTTTAAAACGGTTGTCGGGGACAATGAAAAAAGACTGCTTCAAGCTTTGG
AGATTGCTTCAGGAAGGTCTGACATTGTCATTTTATCCGGTGGACTCGGGCCGACAAAAGATGACCTTACGAAGCAAACC
GTAGCCAAATTTTTAAATTGCGGACTTTTGACGGATAAGGATGCTTTAGAGTACATTGAGGAGTATTATCGTCAAAATAA
GCGGAAAATGACCGATAACAATCTGTTGCAGGCAAAATATCTCGAGGGTTCGTTTTCGCTTCCGAATGAAAGCGGCATGG
CAGTAGGCAGCTATTATCAAAATCCAAACGGTCCTGACTTTATTTTGCTCCCCGGGCCTCCAAGCGAAATGCGCCCCATG
TTTGACAAGCAAGTAATGCACAGATTGAAAGAAAACTATGCAAGAGAACATCTGCTTTTTTCACGAGTTTTGAGATTTTA
TGGTATTGGCGAATCACAATTGGTGACTGAATTGGATGATTTGATCAACGGACAAACGAATCCGACGATTGCGCCTTACG
CTAAAGTTGGCGAGGTCACGCTTCGTTTGACTGCTCAGGCAGATTCAAAAGAAAGCGCAAAAGAAATTCTTGATGAAGCG
GAGCAAGTTATTTCGAAACGCGTGGGTCAATATCTTTATGGGTATGGCGATGACAACAGTCTTCCGAAGGTTGTCGTTGA
AAAACTAAAACAAAAAGGATTGACGGTTTCCGCTTCTGAAAGTTTAACTGGCGGTTCATTCCAGAAAGCAGTTACGGACA
TTGCCGGTTCTTCACATATTTTTCCCGGTGGATTCGTGACCTATTCTGCTTCCGCCAAGGAAAACCTGTTGGACATCCCG
AAGGAAATAATTATTGAAAACGGTGTCGTCAGCGAAGCAACCGCAAAGTGGATGGCTGAACGAACAAGAATCAAAATGGA
TACGGATTTTGGCGTTTCATTTACGGGCGTTGCCGGGCCTGATACGTTGGAGGGAAATCCCGCAGGAACTGTTTGGATCG
GGATATCGCAGCGAGACAGGCAGACTGCTGCTTTTGAATATCATTTTTATGGGGATCGAGATGCGGTTCGCATTCGCAGC
GTTTTAGCCGGATTCGACCTGATTAACAATGAACTATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

52.494

100

0.536
  cinA Streptococcus mitis NCTC 12261

52.494

100

0.536
  cinA Streptococcus pneumoniae TIGR4

51.544

100

0.527
  cinA Streptococcus mutans UA159

51.923

100

0.524
  cinA Streptococcus pneumoniae Rx1

51.306

100

0.524
  cinA Streptococcus pneumoniae R6

51.306

100

0.524
  cinA Streptococcus pneumoniae D39

51.069

100

0.522
  cinA Bacillus subtilis subsp. subtilis str. 168

48.649

98.786

0.481
  cinA Streptococcus suis isolate S10

41.805

100

0.427