Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   GsuE55_RS07165 Genome accession   NZ_AP022557
Coordinates   1463251..1464093 (-) Length   280 a.a.
NCBI ID   WP_172418813.1    Uniprot ID   -
Organism   Geobacillus subterraneus strain E55-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1458251..1469093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GsuE55_RS07145 (GsuE55_14350) - 1458919..1459842 (-) 924 WP_172418577.1 dipeptidase -
  GsuE55_RS07150 (GsuE55_14360) spoVS 1459934..1460194 (-) 261 WP_003251598.1 stage V sporulation protein SpoVS -
  GsuE55_RS07155 (GsuE55_14370) - 1460325..1461119 (-) 795 WP_172418578.1 TIGR00282 family metallophosphoesterase -
  GsuE55_RS07160 (GsuE55_14380) rny 1461218..1462774 (-) 1557 WP_033023152.1 ribonuclease Y -
  GsuE55_RS07165 (GsuE55_14390) recA 1463251..1464093 (-) 843 WP_172418813.1 recombinase RecA Machinery gene
  GsuE55_RS07170 (GsuE55_14400) - 1464137..1465792 (-) 1656 WP_348537093.1 reverse transcriptase domain-containing protein -
  GsuE55_RS07175 (GsuE55_14420) - 1466930..1467217 (-) 288 Protein_1425 DNA recombination/repair protein RecA -
  GsuE55_RS07180 (GsuE55_14430) cinA 1467397..1468641 (-) 1245 WP_172418579.1 competence/damage-inducible protein A Machinery gene

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 30536.76 Da        Isoelectric Point: 5.1256

>NTDB_id=78607 GsuE55_RS07165 WP_172418813.1 1463251..1464093(-) (recA) [Geobacillus subterraneus strain E55-1]
MCGETRMHGVKRGKTAPPGNAEGDCYLSLSLDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAA
LVPKAEIEGEMGDAHVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRA
EQIKQGNDMVGNKTKIKVVKNKVAPPFKTADVDIMYGEGISREGEIIDMASELDIVQKSGSWYSYKDERLGQGRENAKQF
LKENPHIADEIARAIRQHYGIDGSEAGGEPQQDEFALLEE

Nucleotide


Download         Length: 843 bp        

>NTDB_id=78607 GsuE55_RS07165 WP_172418813.1 1463251..1464093(-) (recA) [Geobacillus subterraneus strain E55-1]
GTGTGCGGGGAAACTCGCATGCACGGTGTGAAGCGGGGGAAAACAGCCCCTCCAGGTAATGCTGAGGGTGACTGTTACCT
ATCGCTATCGCTCGATCCAATCTATGCGCAAAAATTAGGAGTCAATATCGATGAACTGTTGCTTTCCCAGCCCGACACCG
GCGAACAGGCGCTCGAAATCGCCGAAGCGCTCGTACGAAGCGGCGCGGTCGATATTATCGTCATCGACTCGGTGGCGGCG
CTCGTGCCGAAAGCGGAAATTGAAGGAGAGATGGGCGATGCCCACGTCGGCTTGCAAGCCCGCCTCATGTCGCAGGCGCT
CCGCAAGCTGTCTGGCGCCATCAACAAATCAAAAACGATCGCCATTTTCATCAACCAAATCCGCGAGAAAGTCGGCGTCA
TGTTTGGCAATCCGGAAACAACGCCGGGGGGACGGGCGCTGAAGTTTTACGCTTCCGTCCGCTTAGAGGTGCGCCGCGCC
GAGCAAATCAAGCAAGGCAACGATATGGTCGGCAACAAGACGAAAATCAAAGTCGTCAAAAACAAAGTGGCGCCGCCATT
TAAAACGGCTGACGTCGACATCATGTACGGTGAAGGCATTTCCCGCGAAGGGGAAATCATCGATATGGCGTCCGAACTCG
ACATCGTGCAAAAGAGCGGTTCGTGGTATTCGTACAAAGACGAGCGGCTTGGCCAAGGGCGGGAAAACGCGAAGCAATTT
TTGAAAGAAAATCCGCATATTGCCGATGAAATCGCCCGTGCCATCCGTCAACATTACGGCATTGACGGCAGCGAGGCGGG
CGGTGAACCACAGCAAGACGAGTTCGCGTTGCTTGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(30-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.554

83.214

0.729
  recA Latilactobacillus sakei subsp. sakei 23K

71.815

92.5

0.664
  recA Streptococcus pneumoniae TIGR4

68.775

90.357

0.621
  recA Streptococcus pneumoniae Rx1

68.775

90.357

0.621
  recA Streptococcus pneumoniae D39

68.775

90.357

0.621
  recA Streptococcus pneumoniae R6

68.775

90.357

0.621
  recA Streptococcus mitis SK321

68.651

90

0.618
  recA Streptococcus mitis NCTC 12261

68.127

89.643

0.611
  recA Streptococcus pyogenes NZ131

69.362

83.929

0.582
  recA Streptococcus mutans UA159

69.068

84.286

0.582
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.854

87.857

0.579
  recA Lactococcus lactis subsp. cremoris KW2

66.805

86.071

0.575
  recA Ralstonia pseudosolanacearum GMI1000

68.534

82.857

0.568
  recA Pseudomonas stutzeri DSM 10701

61.538

88.214

0.543
  recA Acinetobacter baylyi ADP1

59.921

90

0.539
  recA Neisseria gonorrhoeae strain FA1090

64.807

83.214

0.539
  recA Neisseria gonorrhoeae MS11

64.807

83.214

0.539
  recA Neisseria gonorrhoeae MS11

64.807

83.214

0.539
  recA Vibrio cholerae strain A1552

66.228

81.429

0.539
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.228

81.429

0.539
  recA Acinetobacter baumannii D1279779

61.224

87.5

0.536
  recA Helicobacter pylori 26695

63.362

82.857

0.525
  recA Helicobacter pylori strain NCTC11637

63.362

82.857

0.525
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.661

83.214

0.521
  recA Glaesserella parasuis strain SC1401

64.317

81.071

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.332

79.643

0.496

Multiple sequence alignment