Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   GsuE55_RS07180 Genome accession   NZ_AP022557
Coordinates   1467397..1468641 (-) Length   414 a.a.
NCBI ID   WP_172418579.1    Uniprot ID   A0A679FL18
Organism   Geobacillus subterraneus strain E55-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1462397..1473641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GsuE55_RS07165 (GsuE55_14390) recA 1463251..1464093 (-) 843 WP_172418813.1 recombinase RecA Machinery gene
  GsuE55_RS07170 (GsuE55_14400) - 1464137..1465792 (-) 1656 WP_348537093.1 reverse transcriptase domain-containing protein -
  GsuE55_RS07175 (GsuE55_14420) - 1466930..1467217 (-) 288 Protein_1425 DNA recombination/repair protein RecA -
  GsuE55_RS07180 (GsuE55_14430) cinA 1467397..1468641 (-) 1245 WP_172418579.1 competence/damage-inducible protein A Machinery gene
  GsuE55_RS07185 (GsuE55_14440) pgsA 1468672..1469250 (-) 579 WP_172418580.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  GsuE55_RS07190 (GsuE55_14450) - 1469325..1470206 (-) 882 WP_172418581.1 helix-turn-helix domain-containing protein -
  GsuE55_RS07195 (GsuE55_14460) - 1470414..1471205 (-) 792 WP_033023144.1 DUF3388 domain-containing protein -
  GsuE55_RS07200 (GsuE55_14470) - 1471457..1471711 (-) 255 WP_033023142.1 DUF3243 domain-containing protein -
  GsuE55_RS07205 (GsuE55_14480) - 1472099..1472815 (-) 717 WP_033843548.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44323.06 Da        Isoelectric Point: 7.0724

>NTDB_id=78608 GsuE55_RS07180 WP_172418579.1 1467397..1468641(-) (cinA) [Geobacillus subterraneus strain E55-1]
MNAEIIAVGSELLLGQIVNTNAQFLSQQLAALGINVYFQTVVGDNAGRLEQAVKTAQTRANLIIFTGGLGPTKDDVTKET
IARLLGRRLVIDEEALRAIEAYFARANRPMTDNNKKQALVLEGATVLKNENGMAPGMALTVAGITYMLLPGPPKEMRPMF
TRYGIPFLRAAFPLSGRIESRVLRFFGIGEAALETALADLIDAQSNPTIAPLAGDGEVTLRLTAKHRDAAEAQRLLDEAE
AAILARVGRYCYGYDDETLFTKTSERLKERGWTIAAAESLTGGLFLEQLTAVPGASRIVQGGVVCYTNGVKQQVLGVPRP
LLETDGAVSESCARVLAENVRSLCGADVGISLTGVAGPDPLEGHPPGTVYIGIAMRERGTAVRRLTLSGTRGDIRIRAAK
YGCFLLLELLAADR

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=78608 GsuE55_RS07180 WP_172418579.1 1467397..1468641(-) (cinA) [Geobacillus subterraneus strain E55-1]
TTGAACGCGGAGATCATCGCCGTCGGCTCGGAACTGCTGCTTGGCCAAATCGTCAACACGAACGCCCAGTTTTTGTCGCA
GCAGCTTGCCGCCTTGGGCATCAATGTTTATTTCCAGACGGTTGTCGGCGACAACGCCGGCCGCCTTGAGCAGGCGGTGA
AAACGGCGCAAACGAGGGCGAATCTCATCATCTTCACCGGCGGTCTCGGCCCGACGAAGGATGATGTCACGAAGGAGACG
ATCGCCCGTTTGCTTGGCCGCCGGCTCGTCATCGATGAAGAGGCGCTGCGGGCAATCGAAGCGTACTTTGCCCGCGCCAA
TCGGCCGATGACAGACAACAACAAAAAGCAAGCGCTCGTTTTGGAAGGGGCGACCGTCCTGAAAAACGAGAACGGCATGG
CGCCGGGGATGGCGCTCACCGTCGCGGGCATCACGTACATGTTGCTGCCCGGGCCGCCGAAAGAAATGCGCCCGATGTTT
ACCCGTTACGGGATCCCCTTTTTGCGCGCTGCGTTCCCGCTGTCCGGACGCATTGAGTCGCGTGTGCTCCGCTTTTTTGG
CATCGGTGAAGCGGCGCTGGAGACGGCGCTCGCCGATTTGATTGACGCGCAATCGAATCCGACGATCGCGCCGCTGGCCG
GTGACGGCGAGGTGACGCTCCGCTTGACGGCGAAGCATCGGGACGCGGCGGAAGCGCAGCGGCTGCTTGATGAAGCAGAA
GCGGCGATTTTGGCGCGCGTTGGCCGCTACTGTTACGGCTATGACGACGAAACGCTGTTTACGAAGACAAGCGAACGGTT
AAAAGAAAGAGGATGGACGATCGCGGCGGCCGAGAGCCTGACCGGCGGACTGTTTCTCGAACAGCTCACCGCCGTTCCCG
GGGCGTCGCGGATCGTTCAAGGCGGCGTCGTTTGCTACACGAACGGCGTCAAACAACAGGTGCTTGGCGTGCCGCGGCCG
CTTCTCGAAACGGACGGGGCGGTGAGCGAATCGTGCGCGCGTGTGTTGGCGGAAAACGTCCGTTCGCTATGCGGCGCCGA
TGTCGGCATCAGCTTAACCGGCGTCGCCGGCCCCGACCCGCTTGAAGGCCATCCGCCCGGCACCGTCTACATCGGCATTG
CCATGCGCGAGCGCGGCACCGCTGTCCGCCGTTTGACGTTGTCCGGCACGCGCGGCGACATCCGCATCCGCGCCGCCAAA
TACGGTTGTTTTCTGCTGCTGGAGCTGCTCGCGGCCGACCGCTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679FL18

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.658

98.792

0.589
  cinA Streptococcus mitis SK321

49.645

100

0.507
  cinA Streptococcus pneumoniae Rx1

49.173

100

0.502
  cinA Streptococcus pneumoniae TIGR4

49.173

100

0.502
  cinA Streptococcus pneumoniae R6

49.173

100

0.502
  cinA Streptococcus pneumoniae D39

48.936

100

0.5
  cinA Streptococcus mitis NCTC 12261

48.936

100

0.5
  cinA Streptococcus mutans UA159

46.89

100

0.473
  cinA Streptococcus suis isolate S10

41.221

94.928

0.391

Multiple sequence alignment