Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PQE20_RS07650 Genome accession   NZ_CP117054
Coordinates   1620582..1621625 (-) Length   347 a.a.
NCBI ID   WP_050907766.1    Uniprot ID   A0A2Z6ARV5
Organism   Vibrio harveyi strain VH21FL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1615582..1626625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PQE20_RS07635 (PQE20_07635) - 1615793..1616980 (-) 1188 WP_050907767.1 aspartate kinase -
  PQE20_RS07640 (PQE20_07640) alaS 1617183..1619765 (-) 2583 WP_005452121.1 alanine--tRNA ligase -
  PQE20_RS07645 (PQE20_07645) recX 1619908..1620375 (-) 468 WP_009698765.1 recombination regulator RecX -
  PQE20_RS07650 (PQE20_07650) recA 1620582..1621625 (-) 1044 WP_050907766.1 recombinase RecA Machinery gene
  PQE20_RS07655 (PQE20_07655) pncC 1621827..1622309 (-) 483 WP_050907765.1 nicotinamide-nucleotide amidase -
  PQE20_RS07660 (PQE20_07660) mutS 1622395..1624956 (+) 2562 WP_069687471.1 DNA mismatch repair protein MutS -
  PQE20_RS07665 (PQE20_07665) rpoS 1625050..1626033 (-) 984 WP_005452115.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37488.93 Da        Isoelectric Point: 4.9743

>NTDB_id=782378 PQE20_RS07650 WP_050907766.1 1620582..1621625(-) (recA) [Vibrio harveyi strain VH21FL]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGKANACNYLRENPEIGKTIDT
KLREMLLSPALPETPESGEKSEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=782378 PQE20_RS07650 WP_050907766.1 1620582..1621625(-) (recA) [Vibrio harveyi strain VH21FL]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATTATGCG
CCTTGGTGATAACCGCGCAATGGACGTAGAAACCATCTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTTGAGCTGATCGCT
GCTGCGCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCAGAGCACGCGCTAGACCCTGTATATGCGAAGAAACTTGG
CGTTGATATCGATGCACTATTGGTTTCTCAGCCAGACACAGGTGAGCAAGCGCTAGAGATCTGTGACGCACTTGCACGCT
CTGGTGCTATTGACGTTATGGTTGTTGACTCTGTTGCAGCACTAACACCAAAAGCAGAAATTGAAGGCGAAATGGGTGAC
AGCCACATGGGTCTTCAAGCACGTATGCTTTCTCAAGCGATGCGTAAGCTAACGGGTAACCTAAAGCAATCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACAACGACTGGTGGTAACGCAC
TTAAGTTCTACGCTTCTGTTCGTCTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGTGACGAAGTAGTAGGTAACGAA
ACGCGCATCAAAGTTGTTAAGAACAAGATTGCTGCACCGTTTAAAGAAGCAAACACGCAAATCATGTACGGCCAAGGTTT
CAACCGCGAAGGCGAACTGATTGACCTAGGCGTGAAGCACAAGCTAGTTGAAAAAGCAGGTGCATGGTACAGCTACCAAG
GCGACAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTACGCGAAAACCCAGAAATCGGTAAGACTATCGATACT
AAACTGCGTGAAATGCTACTTTCACCAGCACTACCTGAAACACCAGAATCAGGTGAAAAATCAGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z6ARV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

95.441

94.813

0.905
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.441

94.813

0.905
  recA Acinetobacter baylyi ADP1

72.886

98.847

0.72
  recA Pseudomonas stutzeri DSM 10701

75.841

94.236

0.715
  recA Acinetobacter baumannii D1279779

75

94.524

0.709
  recA Glaesserella parasuis strain SC1401

67.816

100

0.68
  recA Neisseria gonorrhoeae MS11

68.712

93.948

0.646
  recA Neisseria gonorrhoeae MS11

68.712

93.948

0.646
  recA Neisseria gonorrhoeae strain FA1090

68.712

93.948

0.646
  recA Ralstonia pseudosolanacearum GMI1000

71.061

89.625

0.637
  recA Helicobacter pylori strain NCTC11637

60.882

97.983

0.597
  recA Helicobacter pylori 26695

60.588

97.983

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

91.931

0.585
  recA Streptococcus pneumoniae R6

62.539

93.084

0.582
  recA Streptococcus pneumoniae Rx1

62.539

93.084

0.582
  recA Streptococcus pneumoniae D39

62.539

93.084

0.582
  recA Streptococcus pneumoniae TIGR4

62.539

93.084

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.507

0.582
  recA Streptococcus mitis NCTC 12261

62.229

93.084

0.579
  recA Streptococcus mitis SK321

61.92

93.084

0.576
  recA Streptococcus mutans UA159

60.923

93.66

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

95.389

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.507

0.568
  recA Streptococcus pyogenes NZ131

60.615

93.66

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

59.215

95.389

0.565
  recA Lactococcus lactis subsp. cremoris KW2

60.062

93.084

0.559