Detailed information NTG0782380

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PQE20_RS07665
• Genome accession: NZ_CP117054
• Coordinates: 1625050..1626033 (-)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain VH21FL
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1620050..1631033

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PQE20_RS07650 (PQE20_07650)	recA	1620582..1621625 (-)	1044	WP_050907766.1	recombinase RecA	Machinery gene
PQE20_RS07655 (PQE20_07655)	pncC	1621827..1622309 (-)	483	WP_050907765.1	nicotinamide-nucleotide amidase	-
PQE20_RS07660 (PQE20_07660)	mutS	1622395..1624956 (+)	2562	WP_069687471.1	DNA mismatch repair protein MutS	-
PQE20_RS07665 (PQE20_07665)	rpoS	1625050..1626033 (-)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
PQE20_RS07670 (PQE20_07670)	-	1626114..1627037 (-)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
PQE20_RS07675 (PQE20_07675)	-	1627052..1627678 (-)	627	WP_017189122.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PQE20_RS07680 (PQE20_07680)	surE	1627678..1628454 (-)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
PQE20_RS07685 (PQE20_07685)	truD	1628454..1629497 (-)	1044	WP_038899661.1	tRNA pseudouridine(13) synthase TruD	-
PQE20_RS07690 (PQE20_07690)	ispF	1629543..1630019 (-)	477	WP_009698769.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PQE20_RS07695 (PQE20_07695)	ispD	1630034..1630744 (-)	711	WP_050907763.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PQE20_RS07700 (PQE20_07700)	ftsB	1630746..1631027 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=782380 PQE20_RS07665 WP_005452115.1 1625050..1626033(-) (rpoS) [Vibrio harveyi strain VH21FL]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=782380 PQE20_RS07665 WP_005452115.1 1625050..1626033(-) (rpoS) [Vibrio harveyi strain VH21FL]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACTTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856