Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PP175_RS09645 Genome accession   NZ_CP116887
Coordinates   1871234..1872289 (+) Length   351 a.a.
NCBI ID   WP_272442537.1    Uniprot ID   -
Organism   Aneurinibacillus sp. Ricciae_BoGa-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1866234..1877289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP175_RS09630 (PP175_09630) pgsA 1867530..1868108 (+) 579 WP_272442534.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PP175_RS09635 (PP175_09635) cinA 1868163..1869407 (+) 1245 WP_272442535.1 competence/damage-inducible protein A Machinery gene
  PP175_RS09640 (PP175_09640) - 1869408..1870991 (+) 1584 WP_272442536.1 DEAD/DEAH box helicase -
  PP175_RS09645 (PP175_09645) recA 1871234..1872289 (+) 1056 WP_272442537.1 recombinase RecA Machinery gene
  PP175_RS09650 (PP175_09650) - 1872879..1873235 (+) 357 WP_272442538.1 hypothetical protein -
  PP175_RS09655 (PP175_09655) - 1873266..1873502 (+) 237 WP_272443232.1 group II intron maturase-specific domain-containing protein -
  PP175_RS09660 (PP175_09660) - 1873899..1874594 (+) 696 WP_272442539.1 RecX family transcriptional regulator -
  PP175_RS09665 (PP175_09665) rny 1874812..1876353 (+) 1542 WP_272442540.1 ribonuclease Y -
  PP175_RS09670 (PP175_09670) - 1876440..1877237 (+) 798 WP_272442541.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37948.19 Da        Isoelectric Point: 5.0749

>NTDB_id=780786 PP175_RS09645 WP_272442537.1 1871234..1872289(+) (recA) [Aneurinibacillus sp. Ricciae_BoGa-3]
MSDRKAALDMALRQIEKQFGKGSVMKLGEVAATHTVSVVSSGSIALDISLGIGGYPRGRIIEIYGPESSGKTTVALHAIA
EVQKTGGTAAFIDAEHALDPIYARNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLAGAINKSKTIAVFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRRIETLKQGNDMVGNR
TKIKVVKNKVAPPFKQCEVDIMYGEGISREGSLLDIGADLDIVNKSGAWYSFNEERLGQGRENSKQFLKENPDIAHAIEQ
QIRDHYELTGATEAVVKAEDEKDEAFALDFE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=780786 PP175_RS09645 WP_272442537.1 1871234..1872289(+) (recA) [Aneurinibacillus sp. Ricciae_BoGa-3]
TTGTCCGATCGCAAAGCTGCTTTAGATATGGCGTTACGCCAGATAGAAAAACAATTTGGGAAGGGTTCGGTCATGAAACT
TGGCGAAGTGGCCGCCACGCATACCGTATCGGTTGTATCCAGCGGTTCCATTGCGCTTGATATTTCGCTTGGAATCGGCG
GATATCCTCGCGGCCGCATTATTGAGATTTATGGCCCTGAATCTTCCGGTAAAACAACCGTCGCCCTTCACGCGATTGCT
GAAGTCCAAAAAACAGGTGGCACAGCAGCTTTTATTGATGCCGAGCATGCCCTTGATCCTATTTACGCAAGAAATTTAGG
TGTAAATATAGATGAACTTCTTCTTTCCCAGCCGGATACAGGCGAGCAGGCTCTCGAAATTGCCGAAGCCCTGGTACGGT
CGGGCGCTGTTGATATTATCGTGATAGACTCGGTTGCCGCTCTTGTACCAAAGGCGGAGATTGAAGGGGAAATGGGCGAT
TCTCACGTAGGCCTTCAGGCACGATTGATGTCACAGGCGCTGCGTAAACTGGCCGGTGCGATAAATAAATCCAAAACCAT
TGCGGTTTTCATTAACCAGCTTCGTGAGAAAGTCGGGGTTATGTTTGGAAATCCGGAAACCACGCCAGGTGGACGTGCTC
TTAAATTTTATTCCAGCGTGCGTCTTGATGTCCGCCGGATTGAAACGTTGAAACAGGGCAATGATATGGTCGGTAACAGA
ACCAAAATAAAGGTCGTAAAGAATAAAGTGGCTCCGCCTTTCAAACAATGCGAAGTTGACATTATGTACGGAGAAGGCAT
TTCTCGCGAAGGAAGCCTGCTCGATATTGGAGCAGATCTGGATATCGTGAACAAAAGTGGTGCCTGGTATTCCTTTAACG
AGGAGCGCTTAGGTCAAGGCCGTGAGAACTCCAAGCAGTTTCTTAAGGAGAATCCAGATATTGCACATGCGATTGAACAG
CAAATCCGGGACCACTACGAATTGACTGGTGCCACAGAGGCCGTCGTGAAGGCTGAAGATGAAAAGGACGAAGCATTTGC
GCTTGATTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.622

93.447

0.772
  recA Latilactobacillus sakei subsp. sakei 23K

70.968

97.151

0.689
  recA Streptococcus mitis NCTC 12261

67.614

100

0.678
  recA Streptococcus mitis SK321

67.33

100

0.675
  recA Streptococcus pneumoniae D39

67.529

99.145

0.67
  recA Streptococcus pneumoniae R6

67.529

99.145

0.67
  recA Streptococcus pneumoniae TIGR4

67.529

99.145

0.67
  recA Streptococcus pneumoniae Rx1

67.529

99.145

0.67
  recA Streptococcus pyogenes NZ131

65.73

100

0.667
  recA Streptococcus mutans UA159

69.697

94.017

0.655
  recA Lactococcus lactis subsp. cremoris KW2

67.857

95.726

0.65
  recA Glaesserella parasuis strain SC1401

62.178

99.43

0.618
  recA Acinetobacter baumannii D1279779

61.671

98.86

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.099

97.721

0.607
  recA Acinetobacter baylyi ADP1

61.739

98.291

0.607
  recA Ralstonia pseudosolanacearum GMI1000

64.438

93.732

0.604
  recA Neisseria gonorrhoeae strain FA1090

65.432

92.308

0.604
  recA Neisseria gonorrhoeae MS11

65.432

92.308

0.604
  recA Neisseria gonorrhoeae MS11

65.432

92.308

0.604
  recA Pseudomonas stutzeri DSM 10701

61.404

97.436

0.598
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.665

91.738

0.584
  recA Vibrio cholerae strain A1552

63.665

91.738

0.584
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.818

94.017

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.654

92.308

0.578
  recA Helicobacter pylori 26695

59.412

96.866

0.576
  recA Helicobacter pylori strain NCTC11637

59.412

96.866

0.576