Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PP175_RS09635 Genome accession   NZ_CP116887
Coordinates   1868163..1869407 (+) Length   414 a.a.
NCBI ID   WP_272442535.1    Uniprot ID   -
Organism   Aneurinibacillus sp. Ricciae_BoGa-3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1863163..1874407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP175_RS09610 (PP175_09610) - 1863980..1864240 (+) 261 WP_272442530.1 DUF3243 domain-containing protein -
  PP175_RS09615 (PP175_09615) - 1864411..1865208 (+) 798 WP_272442531.1 DUF3388 domain-containing protein -
  PP175_RS09620 (PP175_09620) - 1865246..1866088 (+) 843 WP_272442532.1 RodZ domain-containing protein -
  PP175_RS09625 (PP175_09625) rimO 1866189..1867529 (+) 1341 WP_272442533.1 30S ribosomal protein S12 methylthiotransferase RimO -
  PP175_RS09630 (PP175_09630) pgsA 1867530..1868108 (+) 579 WP_272442534.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PP175_RS09635 (PP175_09635) cinA 1868163..1869407 (+) 1245 WP_272442535.1 competence/damage-inducible protein A Machinery gene
  PP175_RS09640 (PP175_09640) - 1869408..1870991 (+) 1584 WP_272442536.1 DEAD/DEAH box helicase -
  PP175_RS09645 (PP175_09645) recA 1871234..1872289 (+) 1056 WP_272442537.1 recombinase RecA Machinery gene
  PP175_RS09650 (PP175_09650) - 1872879..1873235 (+) 357 WP_272442538.1 hypothetical protein -
  PP175_RS09655 (PP175_09655) - 1873266..1873502 (+) 237 WP_272443232.1 group II intron maturase-specific domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45130.71 Da        Isoelectric Point: 5.3335

>NTDB_id=780785 PP175_RS09635 WP_272442535.1 1868163..1869407(+) (cinA) [Aneurinibacillus sp. Ricciae_BoGa-3]
MKAEIIAVGTELLLGQIANTNAQFISEKIAELGIGMYYHTTVGDNHERLRSVVELALNRSDLIIFSGGLGPTKDDLTKET
VGQVLGKPLVEDREAMERILDYFKQRSKPMTENNRKQALVIEGSSILPNDHGMAPGMAIPYQGKHIIMLPGPPSELYPMF
TTYAVPYLLSILNEKQIVHSKVLRFFGIGESALEETLMDLIDNQINPTIAPLAKEGEVTIRLTARSASQDEAEKLIAEVE
REIESRVGRYIYGYNDESLVSVLVDQLKESGKTAAFAESITGGLISHMVTAIPGSSQVLKGSIICYTNEVKQSQLGVPDD
ILSSFGAVSAQSAGLMAEQVRVRLNSDFGVSITGEAGPNPSENKPVGLVYIGINDGSHTHVEEIRLSGRRSGIQLRAAKY
AIFMLLERIKKGGF

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=780785 PP175_RS09635 WP_272442535.1 1868163..1869407(+) (cinA) [Aneurinibacillus sp. Ricciae_BoGa-3]
ATGAAGGCTGAAATCATTGCAGTCGGAACGGAACTGCTCCTGGGACAGATTGCCAACACAAATGCCCAGTTTATCTCGGA
GAAAATAGCAGAGCTTGGGATTGGCATGTATTATCATACAACTGTTGGCGATAATCATGAGCGCCTGCGCTCCGTTGTGG
AGCTGGCGCTCAACCGTTCGGATCTGATTATTTTTTCCGGCGGACTGGGGCCTACCAAAGACGATCTCACGAAAGAAACC
GTAGGGCAGGTACTTGGAAAGCCGCTTGTTGAGGATAGGGAGGCCATGGAACGGATCCTTGATTATTTCAAACAGCGCAG
CAAGCCAATGACTGAAAATAACAGGAAACAGGCGCTCGTTATTGAAGGGAGCAGTATTCTCCCAAATGATCATGGAATGG
CACCGGGAATGGCAATTCCTTATCAAGGCAAGCATATTATTATGCTCCCGGGACCGCCGAGTGAATTATATCCAATGTTT
ACTACATATGCAGTGCCTTACCTTTTATCCATACTGAATGAAAAACAGATCGTTCATTCTAAAGTTCTCCGCTTTTTTGG
CATTGGGGAATCCGCCCTTGAAGAAACGCTAATGGATCTGATTGACAACCAGATCAATCCAACGATTGCCCCTCTTGCTA
AGGAAGGCGAGGTTACGATCCGCCTTACCGCGCGCAGTGCTTCGCAGGATGAAGCGGAGAAGCTAATCGCTGAAGTGGAG
CGGGAAATTGAAAGCAGGGTAGGACGCTATATTTATGGGTATAATGATGAGTCGCTTGTTAGTGTGCTCGTTGATCAGTT
GAAGGAGTCAGGAAAGACCGCAGCCTTTGCTGAAAGCATAACAGGCGGTCTTATCAGCCATATGGTGACAGCGATCCCCG
GAAGTTCACAGGTACTGAAAGGCAGTATCATTTGCTATACGAATGAAGTAAAGCAAAGCCAGCTTGGTGTACCGGATGAT
ATACTCAGCTCGTTTGGTGCGGTAAGCGCCCAATCAGCTGGCCTGATGGCGGAGCAGGTGAGAGTGCGTCTTAACAGTGA
TTTTGGTGTATCGATTACCGGGGAGGCTGGACCAAATCCGTCGGAAAACAAACCTGTCGGGCTCGTTTACATTGGTATAA
ACGATGGATCACATACCCATGTGGAAGAAATCCGCTTATCAGGCAGGCGGTCCGGCATACAGCTGCGCGCAGCGAAATAC
GCAATATTTATGCTGCTGGAACGAATAAAAAAAGGTGGTTTTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

53.902

99.034

0.534
  cinA Streptococcus mutans UA159

47.666

98.309

0.469
  cinA Streptococcus mitis NCTC 12261

46.602

99.517

0.464
  cinA Streptococcus pneumoniae TIGR4

46.602

99.517

0.464
  cinA Streptococcus pneumoniae Rx1

46.117

99.517

0.459
  cinA Streptococcus pneumoniae R6

46.117

99.517

0.459
  cinA Streptococcus pneumoniae D39

45.874

99.517

0.457
  cinA Streptococcus mitis SK321

47.236

96.135

0.454
  cinA Streptococcus suis isolate S10

42.239

94.928

0.401