Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PNF30_RS10770 Genome accession   NZ_CP116774
Coordinates   2090713..2091756 (-) Length   347 a.a.
NCBI ID   WP_047202210.1    Uniprot ID   A0AAX0Z7C6
Organism   Bacillus safensis strain SRCM125915     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2085713..2096756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS10750 (PNF30_10750) spoVS 2086251..2086511 (-) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  PNF30_RS10755 (PNF30_10755) - 2086714..2087508 (-) 795 WP_048239828.1 TIGR00282 family metallophosphoesterase -
  PNF30_RS10760 (PNF30_10760) rny 2087598..2089160 (-) 1563 WP_003211958.1 ribonuclease Y -
  PNF30_RS10765 (PNF30_10765) - 2089394..2090569 (-) 1176 WP_272510153.1 serine hydrolase domain-containing protein -
  PNF30_RS10770 (PNF30_10770) recA 2090713..2091756 (-) 1044 WP_047202210.1 recombinase RecA Machinery gene
  PNF30_RS10775 (PNF30_10775) cinA 2091935..2093185 (-) 1251 WP_111291006.1 competence/damage-inducible protein A Machinery gene
  PNF30_RS10780 (PNF30_10780) pgsA 2093202..2093783 (-) 582 WP_047202208.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PNF30_RS10785 (PNF30_10785) - 2093859..2094758 (-) 900 WP_095408547.1 helix-turn-helix domain-containing protein -
  PNF30_RS10790 (PNF30_10790) - 2094782..2095573 (-) 792 WP_003211480.1 DUF3388 domain-containing protein -
  PNF30_RS10795 (PNF30_10795) - 2095705..2095962 (-) 258 WP_095408546.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37815.05 Da        Isoelectric Point: 4.7661

>NTDB_id=780182 PNF30_RS10770 WP_047202210.1 2090713..2091756(-) (recA) [Bacillus safensis strain SRCM125915]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVAQPEAEEALEQLELE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=780182 PNF30_RS10770 WP_047202210.1 2090713..2091756(-) (recA) [Bacillus safensis strain SRCM125915]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCTAGTGGTTCGTTAGCACTTGATACTGCGCTTGGAATAGGCGGAT
ATCCCCGCGGCCGTATTATCGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCCCTTCATGCCATTGCTGAA
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATTGATGCAGAGCATGCACTCGATCCAGTTTACGCTCAAAAACTAGGTGT
CAACATTGATGAACTGTTACTTTCTCAGCCGGATACAGGAGAGCAAGCACTTGAAATTGCAGAAGCTCTTGTCCGCAGCG
GGGCAGTTGATATTGTTGTTATTGACTCTGTAGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGAGACATGGGTGATTCA
CACGTTGGTCTTCAAGCACGTTTGATGTCCCAAGCACTTCGTAAACTATCAGGTGCCATCAACAAATCAAAAACAATTGC
CATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTCATGTTCGGTAACCCTGAAACAACGCCTGGTGGACGTGCGCTGA
AGTTCTATTCGTCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAATGACATTATGGGGAATAAAACG
AGAATTAAAGTGGTGAAAAACAAAGTAGCACCGCCATTCCGTATTGCGGAAGTAGACATTATGTACGGTGAAGGGATCTC
AAAAGAGGGTGAAATCATCGACCTTGGAAGCGAGCTGGATATCGTACAAAAGAGCGGTGCTTGGTATTCTTACCAAGAGG
AACGTCTTGGACAAGGCCGTGAAAATGCGAAACAGTTCCTAAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAGCATTACGGTTTGGATAATAACGGAGTAGCGCAGCCGGAAGCTGAAGAGGCGCTAGAACAATTAGAATTAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

97.289

95.677

0.931
  recA Latilactobacillus sakei subsp. sakei 23K

74.618

94.236

0.703
  recA Streptococcus pneumoniae R6

65.449

100

0.671
  recA Streptococcus pneumoniae Rx1

65.449

100

0.671
  recA Streptococcus pneumoniae D39

65.449

100

0.671
  recA Streptococcus pneumoniae TIGR4

65.449

100

0.671
  recA Streptococcus mitis NCTC 12261

67.442

99.135

0.669
  recA Streptococcus mitis SK321

68.788

95.101

0.654
  recA Streptococcus mutans UA159

68.693

94.813

0.651
  recA Streptococcus pyogenes NZ131

67.988

94.524

0.643
  recA Lactococcus lactis subsp. cremoris KW2

65.875

97.118

0.64
  recA Helicobacter pylori 26695

62.791

99.135

0.622
  recA Helicobacter pylori strain NCTC11637

62.791

99.135

0.622
  recA Neisseria gonorrhoeae strain FA1090

65.138

94.236

0.614
  recA Neisseria gonorrhoeae MS11

65.138

94.236

0.614
  recA Neisseria gonorrhoeae MS11

65.138

94.236

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

97.983

0.611
  recA Acinetobacter baylyi ADP1

60.58

99.424

0.602
  recA Acinetobacter baumannii D1279779

61.834

97.406

0.602
  recA Glaesserella parasuis strain SC1401

60.465

99.135

0.599
  recA Ralstonia pseudosolanacearum GMI1000

65.615

91.354

0.599
  recA Pseudomonas stutzeri DSM 10701

61.243

97.406

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.236

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

92.219

0.556