Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PNF30_RS10775 Genome accession   NZ_CP116774
Coordinates   2091935..2093185 (-) Length   416 a.a.
NCBI ID   WP_111291006.1    Uniprot ID   -
Organism   Bacillus safensis strain SRCM125915     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2086935..2098185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNF30_RS10760 (PNF30_10760) rny 2087598..2089160 (-) 1563 WP_003211958.1 ribonuclease Y -
  PNF30_RS10765 (PNF30_10765) - 2089394..2090569 (-) 1176 WP_272510153.1 serine hydrolase domain-containing protein -
  PNF30_RS10770 (PNF30_10770) recA 2090713..2091756 (-) 1044 WP_047202210.1 recombinase RecA Machinery gene
  PNF30_RS10775 (PNF30_10775) cinA 2091935..2093185 (-) 1251 WP_111291006.1 competence/damage-inducible protein A Machinery gene
  PNF30_RS10780 (PNF30_10780) pgsA 2093202..2093783 (-) 582 WP_047202208.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PNF30_RS10785 (PNF30_10785) - 2093859..2094758 (-) 900 WP_095408547.1 helix-turn-helix domain-containing protein -
  PNF30_RS10790 (PNF30_10790) - 2094782..2095573 (-) 792 WP_003211480.1 DUF3388 domain-containing protein -
  PNF30_RS10795 (PNF30_10795) - 2095705..2095962 (-) 258 WP_095408546.1 DUF3243 domain-containing protein -
  PNF30_RS10800 (PNF30_10800) ymfI 2096036..2096767 (-) 732 WP_095408545.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45663.73 Da        Isoelectric Point: 4.8565

>NTDB_id=780183 PNF30_RS10775 WP_111291006.1 2091935..2093185(-) (cinA) [Bacillus safensis strain SRCM125915]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETETKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQILG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=780183 PNF30_RS10775 WP_111291006.1 2091935..2093185(-) (cinA) [Bacillus safensis strain SRCM125915]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACTAAAGATGACTTA
ACAAAAGAAACGATTGCGAGCACGCTCGGGAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGCCGCGATATGTCACCGAACAACCGTAAACAGGCGCTCGTTCTAGAAGGATCTGATGTGCTTGTGAACC
GTTTCGGGATGGCCCCAGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAACTG
CACCCGATGTTTGAAAATGAGGCAAAGCCGCTGATTTCTGAGAAACTTGGCTTAAAGGAAAAAATCGTGTCTGTTGTTCT
GCGTTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGACTTAATTGATGCTCAAACGAATCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTAACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAACGAAAATTTTAGCTCGGGTAGGTGAGTATTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCATGAACACGGAAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAACAGCAGATACTTGGC
TGCCGGGAGGAAACATTGTCTTCCCATGGCGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCATGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGTCTATCGACAAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCGGGCATTCGAAAGCGT
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.699

99.76

0.745
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392