Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PND17_RS08010 Genome accession   NZ_CP116772
Coordinates   1521615..1522769 (+) Length   384 a.a.
NCBI ID   WP_087009609.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1516615..1527769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS07990 (PND17_07990) - 1518687..1518908 (+) 222 WP_011680602.1 hypothetical protein -
  PND17_RS07995 (PND17_07995) ruvA 1519061..1519651 (+) 591 WP_011680603.1 Holliday junction branch migration protein RuvA -
  PND17_RS08000 (PND17_08000) - 1519658..1520212 (+) 555 Protein_1558 DNA-3-methyladenine glycosylase I -
  PND17_RS08005 (PND17_08005) cinA 1520308..1521579 (+) 1272 WP_087009608.1 competence/damage-inducible protein A Machinery gene
  PND17_RS08010 (PND17_08010) recA 1521615..1522769 (+) 1155 WP_087009609.1 recombinase RecA Machinery gene
  PND17_RS08015 (PND17_08015) spx 1522946..1523344 (+) 399 WP_002949058.1 transcriptional regulator Spx -
  PND17_RS08020 (PND17_08020) - 1523704..1523895 (-) 192 WP_022096621.1 hypothetical protein -
  PND17_RS08025 (PND17_08025) - 1523974..1524585 (-) 612 WP_271298438.1 HNH endonuclease family protein -
  PND17_RS08030 (PND17_08030) - 1524585..1525289 (-) 705 WP_002946518.1 DUF262 domain-containing protein -
  PND17_RS08035 (PND17_08035) serS 1525652..1526929 (-) 1278 WP_002946517.1 serine--tRNA ligase -
  PND17_RS08040 (PND17_08040) - 1527138..1527512 (-) 375 WP_002946516.1 DUF956 family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41484.06 Da        Isoelectric Point: 4.7444

>NTDB_id=780065 PND17_RS08010 WP_087009609.1 1521615..1522769(+) (recA) [Streptococcus thermophilus strain strain TSGB 4141]
MAKKTKKTEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQTQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISQTGELVKIASDIGIIQKAGAWFSYNGEKIGQGSE
NAKKYLADHPEIFAEIDHKVRVHYGLIELDEDDVVEDTQVEDTQVEDTSDELILDLDSTIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=780065 PND17_RS08010 WP_087009609.1 1521615..1522769(+) (recA) [Streptococcus thermophilus strain strain TSGB 4141]
GTGGCTAAGAAAACAAAGAAAACAGAAGAAATCACAAAGAAGTTTGGTGATGAGCGTCGCAAAGCACTCGACGATGCATT
AAAAAACATTGAAAAAGATTTTGGTAAGGGTGCAGTTATGCGTCTTGGTGAGCGTGCAGAGCAAAAAGTTCAGGTTATGA
GCTCAGGCTCGCTAGCTTTGGATATTGCTCTTGGTGCGGGTGGTTACCCTAAAGGTCGTATTATTGAAATTTACGGACCA
GAATCATCAGGTAAAACAACTGTTGCCCTTCATGCAGTTGCTCAGACTCAAAAAGAAGGTGGCATCGCAGCTTTTATCGA
TGCCGAGCATGCTCTTGACCCTGCGTATGCAGCAGCTCTAGGTGTTAATATCGATGAGCTTCTTTTGTCGCAGCCTGATT
CTGGTGAGCAAGGTCTCGAAATTGCAGGTAAGCTGATTGACTCTGGTGCAGTGGATTTAGTTGTTGTTGACTCAGTTGCG
GCCTTGGTACCACGTGCAGAAATTGATGGAGATATTGGTGACAGTCATGTAGGACTTCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAACTTTCTGCATCTATTAATAAAACAAAAACGATTGCTATCTTTATTAACCAGTTGCGTGAAAAAGTTGGTA
TCATGTTTGGTAACCCAGAGACTACCCCCGGTGGACGTGCTTTAAAATTCTATGCATCAGTACGTCTTGATGTACGTGGT
AATACACAAATTAAAGGAACCGGTGACAAAAAGGACCAAAATGTTGGTAAGGAAACCAAGATTAAGGTTGTTAAAAACAA
AGTTGCTCCACCATTTAAAGAAGCTTTTGTTGAAATTATGTATGGCGAAGGAATTTCACAAACCGGTGAACTTGTAAAAA
TTGCAAGTGATATAGGCATTATTCAGAAAGCCGGAGCTTGGTTCTCATATAATGGGGAGAAAATTGGTCAAGGATCTGAA
AATGCTAAAAAGTATTTAGCAGATCACCCTGAGATTTTTGCAGAAATCGATCATAAAGTACGCGTACACTACGGTCTGAT
TGAGCTAGATGAGGACGATGTTGTTGAAGATACACAAGTTGAAGACACACAAGTTGAAGACACGTCTGATGAACTCATTC
TAGATCTTGATTCAACCATTGAAATCGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

88.312

100

0.885
  recA Streptococcus pyogenes NZ131

88.021

100

0.88
  recA Streptococcus mitis SK321

85.901

99.74

0.857
  recA Streptococcus mitis NCTC 12261

85.901

99.74

0.857
  recA Streptococcus pneumoniae Rx1

84.974

100

0.854
  recA Streptococcus pneumoniae D39

84.974

100

0.854
  recA Streptococcus pneumoniae R6

84.974

100

0.854
  recA Streptococcus pneumoniae TIGR4

84.974

100

0.854
  recA Lactococcus lactis subsp. cremoris KW2

77.62

91.927

0.714
  recA Latilactobacillus sakei subsp. sakei 23K

67.919

90.104

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

85.677

0.581
  recA Neisseria gonorrhoeae MS11

59.827

90.104

0.539
  recA Neisseria gonorrhoeae MS11

59.827

90.104

0.539
  recA Neisseria gonorrhoeae strain FA1090

59.827

90.104

0.539
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.177

88.281

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

84.115

0.526
  recA Glaesserella parasuis strain SC1401

59.412

88.542

0.526
  recA Acinetobacter baylyi ADP1

62.154

84.635

0.526
  recA Acinetobacter baumannii D1279779

62.154

84.635

0.526
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.231

84.635

0.518
  recA Vibrio cholerae strain A1552

61.231

84.635

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.891

88.802

0.505
  recA Pseudomonas stutzeri DSM 10701

58.462

84.635

0.495
  recA Ralstonia pseudosolanacearum GMI1000

57.576

85.938

0.495
  recA Helicobacter pylori strain NCTC11637

56.667

85.938

0.487
  recA Helicobacter pylori 26695

56.667

85.938

0.487