Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PND17_RS08005 Genome accession   NZ_CP116772
Coordinates   1520308..1521579 (+) Length   423 a.a.
NCBI ID   WP_087009608.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain strain TSGB 4141     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1515308..1526579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PND17_RS07975 (PND17_07975) - 1515642..1516033 (-) 392 Protein_1553 LytTR family DNA-binding domain-containing protein -
  PND17_RS07980 (PND17_07980) - 1516257..1516562 (+) 306 WP_141327143.1 hypothetical protein -
  PND17_RS07985 (PND17_07985) mutL 1516614..1518557 (+) 1944 WP_011680601.1 DNA mismatch repair endonuclease MutL -
  PND17_RS07990 (PND17_07990) - 1518687..1518908 (+) 222 WP_011680602.1 hypothetical protein -
  PND17_RS07995 (PND17_07995) ruvA 1519061..1519651 (+) 591 WP_011680603.1 Holliday junction branch migration protein RuvA -
  PND17_RS08000 (PND17_08000) - 1519658..1520212 (+) 555 Protein_1558 DNA-3-methyladenine glycosylase I -
  PND17_RS08005 (PND17_08005) cinA 1520308..1521579 (+) 1272 WP_087009608.1 competence/damage-inducible protein A Machinery gene
  PND17_RS08010 (PND17_08010) recA 1521615..1522769 (+) 1155 WP_087009609.1 recombinase RecA Machinery gene
  PND17_RS08015 (PND17_08015) spx 1522946..1523344 (+) 399 WP_002949058.1 transcriptional regulator Spx -
  PND17_RS08020 (PND17_08020) - 1523704..1523895 (-) 192 WP_022096621.1 hypothetical protein -
  PND17_RS08025 (PND17_08025) - 1523974..1524585 (-) 612 WP_271298438.1 HNH endonuclease family protein -
  PND17_RS08030 (PND17_08030) - 1524585..1525289 (-) 705 WP_002946518.1 DUF262 domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 45872.25 Da        Isoelectric Point: 5.3398

>NTDB_id=780064 PND17_RS08005 WP_087009608.1 1520308..1521579(+) (cinA) [Streptococcus thermophilus strain strain TSGB 4141]
MKAELITVGTEILTGQITNTNAQFLSEKLAELGIDVYFHTAVGDNENRLLSVLDQSSKRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELIFDEEASKKLDSFFATRPKHTRTPNNERQAQIVEGAVPLQNLTGLAVGGIITVEGVTYVVLPGPPSELKPM
VNQELIPALTENHTTLHSRVLRFFGVGESQLVTIIKDLIVNQTDPTIAPYAKVGEVTLRLSTKASSQEEADRKLDVLEEQ
IRSTKTLDGKSLSDLIYGYGESNSLAYEVFYLLKKYGKTITAAESLTAGLFQASVADFPGASQVFKGGFVTYSMEEKAKM
LGIPLSKLEEHGVVSHFTAEKMAEGARVKTDSDYGIALTGVAGPDALEGHQAGTVFIGIADRNQVRSIKVVIGGRSRSDV
RYISTLYAFNLVRQALLQEGNSI

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=780064 PND17_RS08005 WP_087009608.1 1520308..1521579(+) (cinA) [Streptococcus thermophilus strain strain TSGB 4141]
ATGAAAGCTGAATTGATTACAGTAGGAACTGAAATTCTTACAGGGCAAATCACCAATACCAATGCCCAATTTTTATCTGA
AAAACTAGCTGAATTAGGAATTGACGTGTATTTTCACACAGCGGTAGGAGACAATGAAAACCGTCTACTTTCAGTCTTAG
ACCAGTCTAGTAAACGTAGCGATTTAGTCATACTCTGTGGAGGACTTGGCCCTACTGAGGATGACTTAACCAAACAAACA
TTGGCTAAGTTTTTAGGCAAAGAACTCATTTTTGATGAGGAGGCAAGTAAAAAACTGGATAGTTTCTTTGCTACTCGTCC
TAAACATACACGAACGCCTAATAATGAACGCCAAGCGCAAATTGTTGAGGGGGCTGTCCCCTTGCAAAATCTCACAGGTC
TGGCAGTTGGAGGAATTATTACTGTTGAAGGAGTGACCTATGTTGTCTTGCCTGGTCCGCCAAGTGAACTCAAACCTATG
GTGAACCAAGAGCTTATTCCAGCTCTTACAGAGAATCATACTACGCTTCATTCTAGAGTCCTAAGGTTTTTTGGTGTTGG
AGAAAGTCAATTGGTGACTATTATTAAAGATCTCATTGTTAACCAAACAGACCCAACCATTGCGCCCTATGCTAAAGTGG
GAGAAGTGACCCTTCGCTTATCAACAAAGGCATCGTCGCAAGAAGAAGCGGATCGAAAACTAGATGTTTTAGAAGAACAA
ATTCGTTCTACTAAAACTCTAGATGGAAAAAGCTTGTCTGATCTCATCTATGGATATGGAGAATCAAATAGCTTAGCTTA
TGAAGTGTTCTATTTGCTTAAGAAATATGGCAAAACTATTACTGCAGCTGAAAGTTTAACAGCTGGCTTATTTCAAGCTA
GTGTTGCTGATTTTCCTGGAGCTTCACAAGTATTCAAGGGTGGTTTTGTCACCTATAGCATGGAAGAAAAAGCTAAAATG
TTGGGTATTCCCTTATCTAAATTAGAAGAGCATGGTGTTGTTAGTCATTTTACAGCAGAAAAAATGGCTGAGGGTGCCCG
AGTTAAGACAGATAGTGATTACGGAATTGCGCTTACTGGAGTAGCAGGACCAGATGCTTTGGAAGGGCATCAAGCAGGTA
CAGTCTTTATTGGTATTGCCGATAGAAACCAAGTGCGGTCAATTAAGGTTGTTATAGGTGGAAGAAGTCGATCTGATGTT
AGATATATCAGTACACTCTATGCCTTTAACCTAGTTCGCCAAGCTTTATTACAAGAGGGCAACTCAATTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(264-415)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.224

99.054

0.735
  cinA Streptococcus mitis NCTC 12261

73.508

99.054

0.728
  cinA Streptococcus pneumoniae TIGR4

71.838

99.054

0.712
  cinA Streptococcus pneumoniae Rx1

71.599

99.054

0.709
  cinA Streptococcus pneumoniae R6

71.599

99.054

0.709
  cinA Streptococcus pneumoniae D39

71.36

99.054

0.707
  cinA Streptococcus mutans UA159

69.834

99.527

0.695
  cinA Streptococcus suis isolate S10

54.087

98.345

0.532
  cinA Bacillus subtilis subsp. subtilis str. 168

44.418

99.527

0.442