Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PML78_RS06990 Genome accession   NZ_CP116583
Coordinates   1497554..1498597 (-) Length   347 a.a.
NCBI ID   WP_271856618.1    Uniprot ID   -
Organism   Enterococcus dispar strain K205-4b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1492554..1503597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML78_RS06970 (PML78_06970) - 1492992..1493606 (-) 615 WP_016173133.1 YesL family protein -
  PML78_RS06975 (PML78_06975) - 1493809..1495278 (-) 1470 WP_271856614.1 ABC transporter substrate-binding protein -
  PML78_RS06980 (PML78_06980) - 1495297..1496223 (-) 927 WP_071864411.1 carbohydrate ABC transporter permease -
  PML78_RS06985 (PML78_06985) - 1496237..1497181 (-) 945 WP_262929536.1 ABC transporter permease -
  PML78_RS06990 (PML78_06990) recA 1497554..1498597 (-) 1044 WP_271856618.1 recombinase RecA Machinery gene
  PML78_RS06995 (PML78_06995) cinA 1498810..1500051 (-) 1242 WP_262929534.1 competence/damage-inducible protein A Machinery gene
  PML78_RS07000 (PML78_07000) pgsA 1500185..1500763 (-) 579 WP_271856620.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PML78_RS07005 (PML78_07005) - 1500797..1501714 (-) 918 WP_271856622.1 helix-turn-helix domain-containing protein -
  PML78_RS07010 (PML78_07010) ymfI 1501735..1502460 (-) 726 WP_016173142.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37220.28 Da        Isoelectric Point: 4.9714

>NTDB_id=778621 PML78_RS06990 WP_271856618.1 1497554..1498597(-) (recA) [Enterococcus dispar strain K205-4b]
MADDRKSALDAALKKIEKNYGKGAVMKLGEKADQQISTIPSGSLALDVALGVGGYPRGRIVEIYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPLYAQNLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGSINKTKTIAVFINQIREKVGIMFGNPETTPGGRALKFYATIRLEVRRAEQLKSGTDIIGNR
TKIKVVKNKVAPPFKVAEVDLMYGQGISQEGELLDMASEQDIVDKSGAWYSYKGDRIGQGRDNAKNYMKEHPEMKAEIST
RVREAYGIGDGDGSEVPEKAQEELPLD

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=778621 PML78_RS06990 WP_271856618.1 1497554..1498597(-) (recA) [Enterococcus dispar strain K205-4b]
TTGGCAGATGATCGCAAATCAGCTTTAGATGCTGCATTAAAAAAAATTGAGAAAAACTACGGTAAAGGTGCCGTAATGAA
ATTAGGAGAAAAAGCCGACCAACAAATTTCGACTATTCCAAGTGGCTCACTTGCGTTAGACGTAGCTTTAGGTGTGGGTG
GCTATCCCCGCGGCCGAATTGTTGAAATCTACGGCCCTGAAAGTTCTGGTAAAACAACAGTAGCTTTACATGCTATTGCC
GAAGTGCAAAAAAATGGCGGAACTGCTGCTTTTATTGATGCAGAACATGCCTTAGACCCGTTATATGCACAAAACTTAGG
CGTTAATATTGATGAATTGCTGTTATCGCAACCAGATACAGGAGAACAAGGATTAGAAATTGCTGATGCTTTAGTTTCCA
GTGGTGCGATTGATATCGTTGTAATCGATTCTGTTGCCGCTTTAGTACCACGAGCAGAAATTGATGGTGAAATGGGAGAT
GCCCATGTGGGTCTACAAGCACGTTTGATGTCTCAAGCGTTGCGTAAACTTTCAGGTTCTATTAATAAAACCAAAACAAT
TGCTGTCTTTATTAACCAAATTCGTGAAAAAGTCGGTATCATGTTTGGGAACCCTGAAACAACTCCAGGGGGCCGGGCTC
TGAAATTCTACGCAACCATTCGCTTAGAAGTGCGCCGGGCAGAACAATTAAAATCTGGTACCGATATTATTGGGAACCGG
ACAAAAATCAAAGTTGTTAAAAACAAAGTCGCTCCGCCTTTTAAAGTCGCTGAAGTGGACTTGATGTATGGCCAAGGTAT
CTCCCAAGAAGGCGAACTGTTGGATATGGCATCTGAACAAGATATTGTTGATAAAAGTGGTGCTTGGTATTCTTATAAAG
GCGATCGCATTGGTCAAGGTCGTGACAATGCGAAGAACTACATGAAAGAACATCCTGAAATGAAAGCTGAAATCTCAACA
CGTGTCAGAGAAGCTTACGGGATTGGCGATGGCGATGGTAGTGAAGTTCCTGAAAAAGCGCAAGAAGAATTACCTTTAGA
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.744

99.135

0.761
  recA Bacillus subtilis subsp. subtilis str. 168

75.758

95.101

0.72
  recA Streptococcus pneumoniae D39

66.389

100

0.689
  recA Streptococcus pneumoniae R6

66.389

100

0.689
  recA Streptococcus pneumoniae TIGR4

66.389

100

0.689
  recA Streptococcus pneumoniae Rx1

66.389

100

0.689
  recA Streptococcus mutans UA159

67.816

100

0.68
  recA Streptococcus mitis SK321

67.826

99.424

0.674
  recA Streptococcus mitis NCTC 12261

67.733

99.135

0.671
  recA Streptococcus pyogenes NZ131

70.393

95.389

0.671
  recA Lactococcus lactis subsp. cremoris KW2

68.278

95.389

0.651
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.134

94.813

0.608
  recA Neisseria gonorrhoeae strain FA1090

63.222

94.813

0.599
  recA Neisseria gonorrhoeae MS11

63.222

94.813

0.599
  recA Neisseria gonorrhoeae MS11

63.222

94.813

0.599
  recA Glaesserella parasuis strain SC1401

58.357

100

0.594
  recA Acinetobacter baylyi ADP1

59.475

98.847

0.588
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.094

94.813

0.579
  recA Ralstonia pseudosolanacearum GMI1000

61.28

94.524

0.579
  recA Acinetobacter baumannii D1279779

61.42

93.372

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

95.101

0.571
  recA Pseudomonas stutzeri DSM 10701

61.3

93.084

0.571
  recA Vibrio cholerae strain A1552

60.802

93.372

0.568
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.802

93.372

0.568
  recA Helicobacter pylori strain NCTC11637

60.123

93.948

0.565
  recA Helicobacter pylori 26695

60.123

93.948

0.565