Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PML78_RS06995 Genome accession   NZ_CP116583
Coordinates   1498810..1500051 (-) Length   413 a.a.
NCBI ID   WP_262929534.1    Uniprot ID   -
Organism   Enterococcus dispar strain K205-4b     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1493810..1505051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML78_RS06980 (PML78_06980) - 1495297..1496223 (-) 927 WP_071864411.1 carbohydrate ABC transporter permease -
  PML78_RS06985 (PML78_06985) - 1496237..1497181 (-) 945 WP_262929536.1 ABC transporter permease -
  PML78_RS06990 (PML78_06990) recA 1497554..1498597 (-) 1044 WP_271856618.1 recombinase RecA Machinery gene
  PML78_RS06995 (PML78_06995) cinA 1498810..1500051 (-) 1242 WP_262929534.1 competence/damage-inducible protein A Machinery gene
  PML78_RS07000 (PML78_07000) pgsA 1500185..1500763 (-) 579 WP_271856620.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PML78_RS07005 (PML78_07005) - 1500797..1501714 (-) 918 WP_271856622.1 helix-turn-helix domain-containing protein -
  PML78_RS07010 (PML78_07010) ymfI 1501735..1502460 (-) 726 WP_016173142.1 elongation factor P 5-aminopentanone reductase -
  PML78_RS07015 (PML78_07015) yfmH 1502463..1503761 (-) 1299 WP_271858562.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  PML78_RS07020 (PML78_07020) yfmF 1503758..1505020 (-) 1263 WP_271856624.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45029.30 Da        Isoelectric Point: 4.8600

>NTDB_id=778622 PML78_RS06995 WP_262929534.1 1498810..1500051(-) (cinA) [Enterococcus dispar strain K205-4b]
MKAEIIAVGTEILLGQVVNTNATFLSEELADLGIEVYYHSVVGDNPERLESLLKTADQRSDLVVLCGGLGPTTDDLTKDV
VAAHVGQRLVEDAAGRKELETFFTRAKREMTANNLRQVLVFEDGNALPNETGLAIGIFYQSPTTAFLLLPGPPSELRPMF
LHHGKALLQEKFPQQEQLISRVLRFYGIGESKLVTQLAQLIENQTNPTIAPYAKPNEVTLRLTVKTQDEKSGQKLLDETE
AAIKEEVGEYFYGYGEENSLEAVVVKLLQDKGCTVTAAESLTAGLFQATLANVSGASQIFSGGFVTYAKEQKEKLLQINP
NLLAEHGVVSEACAKAMAQNAREIIGADYALSFTGVAGPNELEGQPAGTVWIGLASEKEVVAYLYHFTRDRSYVRHSAVM
AGLDLLRRAVLKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=778622 PML78_RS06995 WP_262929534.1 1498810..1500051(-) (cinA) [Enterococcus dispar strain K205-4b]
ATGAAAGCAGAAATTATTGCGGTTGGGACAGAAATTTTATTGGGTCAAGTTGTGAATACCAATGCGACTTTTCTTTCAGA
AGAATTAGCAGATCTTGGGATTGAAGTCTATTACCATAGCGTGGTAGGAGATAATCCCGAACGTTTAGAAAGTCTATTAA
AAACAGCTGATCAGCGGAGCGATTTAGTGGTTTTATGTGGAGGGTTGGGACCTACTACAGACGATTTAACCAAAGATGTT
GTCGCCGCTCATGTTGGTCAACGTTTAGTCGAAGATGCAGCCGGGCGTAAAGAATTAGAAACTTTTTTCACGCGCGCTAA
GCGGGAAATGACAGCCAATAATTTAAGACAAGTACTGGTTTTTGAAGACGGGAATGCTTTGCCCAATGAAACTGGGCTGG
CAATTGGTATTTTTTACCAAAGCCCGACCACTGCTTTCTTACTTTTGCCAGGACCGCCATCTGAGTTACGGCCGATGTTT
TTACACCATGGCAAAGCGTTATTACAAGAAAAATTTCCCCAACAAGAGCAATTAATTTCCCGCGTCTTACGTTTTTATGG
CATTGGGGAGTCGAAATTAGTCACTCAATTGGCGCAACTAATTGAAAATCAGACGAATCCTACAATTGCGCCTTATGCTA
AACCTAATGAGGTGACGTTACGATTAACGGTTAAGACCCAAGATGAAAAGAGCGGCCAAAAATTATTGGATGAAACAGAA
GCTGCGATTAAAGAGGAGGTGGGGGAATATTTTTACGGTTACGGCGAGGAAAATTCTCTGGAAGCCGTCGTTGTAAAATT
ATTACAAGACAAGGGCTGCACTGTAACTGCTGCTGAAAGTTTAACTGCTGGACTCTTTCAAGCCACCCTTGCCAATGTGA
GTGGCGCTTCCCAAATTTTTAGCGGCGGATTTGTCACTTATGCTAAAGAACAAAAAGAAAAATTATTGCAAATTAATCCA
AATTTATTGGCAGAACATGGCGTGGTCAGTGAAGCCTGTGCCAAGGCCATGGCTCAAAATGCTAGAGAAATTATCGGCGC
TGATTATGCCCTAAGTTTCACCGGTGTGGCTGGTCCAAATGAATTGGAAGGTCAGCCTGCAGGAACTGTTTGGATTGGTT
TAGCGAGCGAAAAAGAAGTAGTTGCCTACTTGTATCACTTTACCCGCGACCGGAGTTATGTACGCCATAGTGCCGTAATG
GCGGGGCTAGACCTACTGCGCCGCGCTGTTTTGAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

53.095

100

0.54
  cinA Streptococcus mitis NCTC 12261

52.857

100

0.538
  cinA Streptococcus mutans UA159

53.253

100

0.535
  cinA Streptococcus pneumoniae TIGR4

52.619

100

0.535
  cinA Streptococcus pneumoniae D39

52.381

100

0.533
  cinA Streptococcus pneumoniae Rx1

52.143

100

0.53
  cinA Streptococcus pneumoniae R6

52.143

100

0.53
  cinA Bacillus subtilis subsp. subtilis str. 168

46.117

99.758

0.46
  cinA Streptococcus suis isolate S10

42.584

100

0.431