Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PML98_RS13305 Genome accession   NZ_CP116581
Coordinates   2871384..2872424 (-) Length   346 a.a.
NCBI ID   WP_005875116.1    Uniprot ID   Q6KCJ7
Organism   Enterococcus durans strain R59-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2866384..2877424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML98_RS13295 (PML98_13295) proC 2868622..2869425 (+) 804 WP_081135001.1 pyrroline-5-carboxylate reductase -
  PML98_RS13300 (PML98_13300) rny 2869460..2871016 (-) 1557 WP_005875117.1 ribonuclease Y -
  PML98_RS13305 (PML98_13305) recA 2871384..2872424 (-) 1041 WP_005875116.1 recombinase RecA Machinery gene
  PML98_RS13310 (PML98_13310) cinA 2872529..2873776 (-) 1248 WP_115234856.1 competence/damage-inducible protein A Machinery gene
  PML98_RS13315 (PML98_13315) pgsA 2874100..2874678 (-) 579 WP_005875113.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PML98_RS13320 (PML98_13320) - 2875222..2876109 (-) 888 WP_113846356.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37255.55 Da        Isoelectric Point: 4.8293

>NTDB_id=778600 PML98_RS13305 WP_005875116.1 2871384..2872424(-) (recA) [Enterococcus durans strain R59-1]
MADDRKAALEAALKKIEKNYGKGSIMKLGEKIDQQISTIPSGSLALDVALGVGGYPRGRIVEVYGPESSGKTTVALHAIA
EVQRNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKIYMANHPEMMAEVSA
LVRAAYGIGEEVEVPEEAQAELPLEE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=778600 PML98_RS13305 WP_005875116.1 2871384..2872424(-) (recA) [Enterococcus durans strain R59-1]
TTGGCAGATGATCGTAAAGCAGCGTTAGAAGCTGCGTTGAAAAAAATTGAAAAGAACTATGGTAAGGGTTCGATCATGAA
GTTAGGCGAAAAGATCGACCAACAGATTTCTACCATCCCAAGTGGTTCACTTGCACTAGATGTTGCATTGGGAGTTGGTG
GCTATCCTCGAGGCCGAATCGTTGAAGTCTATGGACCAGAAAGTTCAGGTAAGACCACAGTTGCCTTACATGCAATTGCT
GAAGTACAAAGAAATGGTGGCACAGCAGCGTTTATTGATGCTGAACATGCCTTAGATCCACAATATGCCCAAAAATTAGG
CGTAAATATCGATGAATTACTTCTTTCTCAACCTGATACTGGTGAACAGGGATTAGAAATCGCTGATGCTTTAGTATCAA
GTGGTGCGGTTGACATCGTTGTTGTCGATTCTGTAGCAGCTTTAGTTCCTCGTGCAGAAATTGATGGCGAAATGGGTGAT
TCTCACGTAGGGTTACAAGCTCGTCTAATGTCTCAAGCATTACGTAAATTATCAGGATCGATCAATAAAACAAAAACGAT
CGCGATCTTTATCAACCAGATCCGTGAAAAAGTCGGCGTGATGTTTGGTAATCCTGAAATCACACCAGGGGGACGTGCGT
TGAAATTCTACGCAACGATCCGTTTAGAAGTCCGTCGTGCGGAACAGTTAAAACAAGGAACAGATATTGTTGGTAACCGT
ACAAAGATCAAAGTGGTTAAAAATAAAGTTGCGCCACCGTTCAAAATCGCTGAAGTGGATGTCATGTACGGTCAAGGTAT
TTCTCAAGAAGGAGAATTACTGGATATGGCTGTTGAAAAAGACATCGTTGATAAGAGCGGAGCTTGGTACTCTTATAAAG
AAGACCGTATCGGGCAAGGACGCGAAAATGCAAAGATCTATATGGCAAATCATCCAGAAATGATGGCAGAAGTTTCTGCA
TTGGTACGTGCGGCTTATGGTATCGGCGAAGAAGTCGAAGTACCAGAAGAAGCACAGGCAGAACTACCATTAGAAGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6KCJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.36

99.422

0.789
  recA Bacillus subtilis subsp. subtilis str. 168

78.769

93.931

0.74
  recA Streptococcus pneumoniae D39

70.746

96.821

0.685
  recA Streptococcus pneumoniae R6

70.746

96.821

0.685
  recA Streptococcus pneumoniae Rx1

70.746

96.821

0.685
  recA Streptococcus pneumoniae TIGR4

70.746

96.821

0.685
  recA Streptococcus mitis SK321

70.659

96.532

0.682
  recA Streptococcus mitis NCTC 12261

70.149

96.821

0.679
  recA Streptococcus mutans UA159

67.151

99.422

0.668
  recA Streptococcus pyogenes NZ131

68.882

95.665

0.659
  recA Lactococcus lactis subsp. cremoris KW2

66.866

96.821

0.647
  recA Neisseria gonorrhoeae strain FA1090

61.111

98.844

0.604
  recA Neisseria gonorrhoeae MS11

61.111

98.844

0.604
  recA Neisseria gonorrhoeae MS11

61.111

98.844

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.509

0.601
  recA Ralstonia pseudosolanacearum GMI1000

60.534

97.399

0.59
  recA Acinetobacter baumannii D1279779

58.333

100

0.587
  recA Vibrio cholerae strain A1552

62.539

93.353

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

93.353

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.064

98.844

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

93.931

0.578
  recA Helicobacter pylori 26695

57.514

100

0.575
  recA Helicobacter pylori strain NCTC11637

57.514

100

0.575
  recA Pseudomonas stutzeri DSM 10701

61.111

93.642

0.572
  recA Acinetobacter baylyi ADP1

61.3

93.353

0.572
  recA Glaesserella parasuis strain SC1401

61.059

92.775

0.566