Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PML98_RS13310 Genome accession   NZ_CP116581
Coordinates   2872529..2873776 (-) Length   415 a.a.
NCBI ID   WP_115234856.1    Uniprot ID   -
Organism   Enterococcus durans strain R59-1     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2867529..2878776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML98_RS13295 (PML98_13295) proC 2868622..2869425 (+) 804 WP_081135001.1 pyrroline-5-carboxylate reductase -
  PML98_RS13300 (PML98_13300) rny 2869460..2871016 (-) 1557 WP_005875117.1 ribonuclease Y -
  PML98_RS13305 (PML98_13305) recA 2871384..2872424 (-) 1041 WP_005875116.1 recombinase RecA Machinery gene
  PML98_RS13310 (PML98_13310) cinA 2872529..2873776 (-) 1248 WP_115234856.1 competence/damage-inducible protein A Machinery gene
  PML98_RS13315 (PML98_13315) pgsA 2874100..2874678 (-) 579 WP_005875113.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PML98_RS13320 (PML98_13320) - 2875222..2876109 (-) 888 WP_113846356.1 RodZ domain-containing protein -
  PML98_RS13325 (PML98_13325) yfmH 2876341..2877633 (-) 1293 WP_005875110.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 46005.51 Da        Isoelectric Point: 4.8797

>NTDB_id=778601 PML98_RS13310 WP_115234856.1 2872529..2873776(-) (cinA) [Enterococcus durans strain R59-1]
MKSEIIAVGTELLLGQVVNTNATFLSEQLADLGIDVYYQTVVGDNPTRLEELIQLAETRSELIILCGGLGPTEDDLTKEV
TAKHLGRELIQNTEGYKKLLTFFETTKRKMTENNLQQSQIIDGGIPLPNRTGLALGTFFQTEDHVYILLPGPPSELKPMF
IEQARPLLEEKFPSEEKLISKVLRFYGIGESRLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDAHAGNQALLALE
ERIQERVGEYFYGYGDDNSLPKVVVDLLKERNQTITAAESLTAGAFQAALGDIPGVSAVFPGGFTTYSLETKANFLTIDR
HFLEKYGTVSQECAEQMALQARKLAGTDYGISFTGVAGPDELEGQPVGTVWIALAYGDEAVISQKYRFTRDRAAIRHSAV
MQGFDLLRRQVLRKK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=778601 PML98_RS13310 WP_115234856.1 2872529..2873776(-) (cinA) [Enterococcus durans strain R59-1]
ATGAAATCAGAAATTATTGCCGTAGGAACAGAGCTTTTATTAGGGCAAGTTGTCAATACCAACGCGACATTTTTATCAGA
ACAATTAGCAGATCTTGGGATCGACGTCTATTATCAAACAGTTGTGGGAGATAATCCTACACGTTTAGAAGAGTTGATTC
AGTTAGCAGAAACGAGAAGTGAATTGATCATTTTGTGTGGTGGATTAGGACCGACAGAAGATGATCTAACAAAAGAAGTG
ACAGCAAAGCATCTTGGTAGAGAACTAATTCAAAATACAGAAGGATATAAAAAATTATTGACCTTTTTTGAAACAACGAA
ACGAAAGATGACAGAAAACAATTTGCAACAATCACAAATCATCGATGGGGGAATCCCGCTACCCAATCGTACTGGTCTAG
CCTTGGGTACATTTTTCCAAACAGAAGATCATGTGTATATCTTACTACCGGGTCCGCCAAGCGAATTGAAACCAATGTTC
ATCGAACAAGCGCGTCCACTATTGGAAGAAAAATTTCCATCAGAAGAAAAATTGATTTCAAAAGTGCTAAGGTTTTATGG
TATTGGTGAGTCACGTCTAGTAACAGAATTAAAAGATTTGATCGAAACACAGATCAATCCAACGATCGCACCTTATGCAA
AACCCAACGAGGTCACTTTGCGATTAACTGTGAAAACAAAGGATGCACATGCAGGAAATCAAGCATTACTAGCTTTAGAA
GAAAGAATCCAAGAACGAGTTGGCGAGTATTTTTATGGCTACGGGGATGACAATTCTCTGCCAAAAGTTGTCGTGGATCT
CTTAAAAGAAAGAAACCAAACGATTACTGCGGCGGAAAGTTTGACCGCAGGAGCTTTTCAAGCTGCATTAGGAGATATCC
CAGGTGTATCTGCAGTCTTTCCTGGTGGTTTTACAACGTATTCGTTAGAAACAAAAGCAAATTTTTTAACGATTGATCGC
CACTTTTTAGAAAAATATGGGACAGTTAGTCAAGAATGTGCGGAGCAAATGGCTCTTCAAGCAAGAAAACTAGCAGGAAC
AGATTACGGGATTTCTTTCACTGGAGTAGCTGGACCAGATGAACTCGAAGGACAGCCTGTTGGGACGGTTTGGATTGCGT
TAGCGTATGGAGACGAAGCAGTCATTTCACAGAAATATCGATTCACGAGAGACCGCGCAGCGATCCGACACAGCGCCGTA
ATGCAAGGATTTGATCTGTTAAGAAGACAAGTATTAAGAAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

53.11

100

0.535
  cinA Streptococcus pneumoniae TIGR4

52.619

100

0.533
  cinA Streptococcus pneumoniae Rx1

52.381

100

0.53
  cinA Streptococcus pneumoniae R6

52.381

100

0.53
  cinA Streptococcus pneumoniae D39

52.381

100

0.53
  cinA Streptococcus mitis SK321

52.381

100

0.53
  cinA Streptococcus mitis NCTC 12261

51.905

100

0.525
  cinA Bacillus subtilis subsp. subtilis str. 168

49.517

99.759

0.494
  cinA Streptococcus suis isolate S10

43.468

100

0.441