Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PML89_RS05140 Genome accession   NZ_CP116503
Coordinates   1095535..1096572 (-) Length   345 a.a.
NCBI ID   WP_023605862.1    Uniprot ID   V6Q564
Organism   Vagococcus lutrae strain K136-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1090535..1101572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML89_RS05120 (PML89_05120) - 1091803..1092003 (-) 201 WP_023605866.1 cold-shock protein -
  PML89_RS05125 (PML89_05125) - 1092179..1092718 (-) 540 WP_023605865.1 HdeD family acid-resistance protein -
  PML89_RS05130 (PML89_05130) - 1092741..1093604 (-) 864 WP_126762878.1 alpha/beta fold hydrolase -
  PML89_RS05135 (PML89_05135) rny 1093756..1095315 (-) 1560 WP_126762880.1 ribonuclease Y -
  PML89_RS05140 (PML89_05140) recA 1095535..1096572 (-) 1038 WP_023605862.1 recombinase RecA Machinery gene
  PML89_RS05145 (PML89_05145) cinA 1096658..1097911 (-) 1254 WP_272157924.1 competence/damage-inducible protein A Machinery gene
  PML89_RS05150 (PML89_05150) pgsA 1098051..1098629 (-) 579 WP_252999577.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PML89_RS05155 (PML89_05155) - 1098653..1099501 (-) 849 WP_252999578.1 helix-turn-helix domain-containing protein -
  PML89_RS05160 (PML89_05160) ymfI 1099526..1100251 (-) 726 WP_252999579.1 elongation factor P 5-aminopentanone reductase -
  PML89_RS05165 (PML89_05165) yfmH 1100254..1101555 (-) 1302 WP_248853054.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37195.46 Da        Isoelectric Point: 4.6635

>NTDB_id=777671 PML89_RS05140 WP_023605862.1 1095535..1096572(-) (recA) [Vagococcus lutrae strain K136-2]
MADDRKVALDAALKKIEKNFGKGSIMKLGEKVDTQISTVPSGSIALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPAYAKNLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDMVVVDSVAALVPRAEIDGEMGD
THVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGSPETTPGGRALKFYATIRIDVRRAEQIKAGTEVMGNR
TRIKVVKNKVAPPFRMAEVDIMYGKGISKEGELLDMAVEQDIVDKSGAWYSYNEERMGQGRENSKQFLMDNPEIMAEIDA
KVRAAYGIGEPVDEELDVTLDLEEE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=777671 PML89_RS05140 WP_023605862.1 1095535..1096572(-) (recA) [Vagococcus lutrae strain K136-2]
TTGGCAGATGATCGTAAAGTAGCACTAGATGCTGCATTAAAAAAAATAGAAAAAAACTTTGGTAAAGGCTCTATTATGAA
GTTAGGGGAAAAAGTAGACACACAAATTTCAACTGTTCCTAGCGGTTCTATCGCGTTAGACGTCGCTTTAGGAGTGGGTG
GCTATCCCCGAGGCCGAATTATAGAAGTATATGGTCCTGAGAGTTCAGGTAAAACAACCGTAGCACTTCATGCCATTGCT
GAAGTACAAAAAAATGGTGGGACTGCGGCGTTTATTGACGCAGAGCATGCCTTAGACCCTGCATATGCTAAAAATTTAGG
GGTTAATATTGATGAGTTATTACTTTCTCAGCCAGATACTGGTGAGCAAGGGTTGGAGATTGCGGATGCATTAGTATCAA
GTGGTGCGATTGACATGGTGGTCGTTGACTCGGTCGCAGCTTTAGTTCCTAGAGCAGAGATTGACGGCGAGATGGGGGAC
ACACATGTGGGCTTACAAGCTCGTTTAATGTCACAAGCCCTAAGAAAACTATCTGGTTCGATTAACAAAACAAAAACCAT
TGCGATTTTTATTAACCAAATTCGTGAAAAAGTAGGAGTTATGTTCGGGAGCCCAGAAACCACTCCGGGTGGACGCGCCT
TAAAATTCTATGCAACGATTCGTATTGATGTACGCCGCGCTGAACAAATTAAAGCGGGTACGGAAGTGATGGGAAATCGT
ACGCGAATAAAAGTTGTAAAAAATAAGGTAGCCCCTCCTTTTAGAATGGCTGAAGTCGATATTATGTATGGTAAAGGGAT
ATCTAAGGAAGGCGAACTATTAGATATGGCCGTCGAACAAGATATCGTGGATAAAAGTGGCGCTTGGTATAGTTACAATG
AAGAGCGCATGGGACAAGGTCGTGAAAACTCTAAACAGTTTCTAATGGATAATCCTGAGATTATGGCAGAAATTGATGCT
AAAGTGCGAGCTGCTTATGGTATTGGCGAGCCTGTTGATGAAGAGCTAGATGTGACATTGGATTTAGAAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V6Q564

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.171

98.261

0.768
  recA Bacillus subtilis subsp. subtilis str. 168

79.692

94.203

0.751
  recA Streptococcus mitis NCTC 12261

67.222

100

0.701
  recA Streptococcus pneumoniae R6

69.527

97.971

0.681
  recA Streptococcus pneumoniae TIGR4

69.527

97.971

0.681
  recA Streptococcus pneumoniae Rx1

69.527

97.971

0.681
  recA Streptococcus pneumoniae D39

69.527

97.971

0.681
  recA Streptococcus mitis SK321

70.821

95.362

0.675
  recA Streptococcus pyogenes NZ131

69.88

96.232

0.672
  recA Streptococcus mutans UA159

69.88

96.232

0.672
  recA Lactococcus lactis subsp. cremoris KW2

68.389

95.362

0.652
  recA Neisseria gonorrhoeae strain FA1090

66.261

95.362

0.632
  recA Neisseria gonorrhoeae MS11

66.261

95.362

0.632
  recA Neisseria gonorrhoeae MS11

66.261

95.362

0.632
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.832

94.783

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.222

95.362

0.603
  recA Ralstonia pseudosolanacearum GMI1000

66.134

90.725

0.6
  recA Acinetobacter baylyi ADP1

62.539

93.623

0.586
  recA Helicobacter pylori 26695

60.725

95.942

0.583
  recA Helicobacter pylori strain NCTC11637

60.725

95.942

0.583
  recA Vibrio cholerae strain A1552

62.229

93.623

0.583
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.229

93.623

0.583
  recA Pseudomonas stutzeri DSM 10701

61.728

93.913

0.58
  recA Acinetobacter baumannii D1279779

61.61

93.623

0.577
  recA Glaesserella parasuis strain SC1401

61.371

93.043

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

94.203

0.565