Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PH545_RS01230 Genome accession   NZ_CP116414
Coordinates   235103..236146 (+) Length   347 a.a.
NCBI ID   WP_289880818.1    Uniprot ID   -
Organism   Vibrio harveyi strain K2014767     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 230103..241146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH545_RS01215 (PH545_01215) rpoS 230695..231678 (+) 984 WP_005452115.1 RNA polymerase sigma factor RpoS Regulator
  PH545_RS01220 (PH545_01220) mutS 231772..234333 (-) 2562 WP_009698766.1 DNA mismatch repair protein MutS -
  PH545_RS01225 (PH545_01225) pncC 234419..234901 (+) 483 WP_009703950.1 nicotinamide-nucleotide amidase -
  PH545_RS01230 (PH545_01230) recA 235103..236146 (+) 1044 WP_289880818.1 recombinase RecA Machinery gene
  PH545_RS01235 (PH545_01235) recX 236353..236820 (+) 468 WP_009698765.1 recombination regulator RecX -
  PH545_RS01240 (PH545_01240) alaS 236963..239545 (+) 2583 WP_050921246.1 alanine--tRNA ligase -
  PH545_RS01245 (PH545_01245) - 239748..240935 (+) 1188 WP_005452123.1 aspartate kinase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37546.96 Da        Isoelectric Point: 4.8950

>NTDB_id=777273 PH545_RS01230 WP_289880818.1 235103..236146(+) (recA) [Vibrio harveyi strain K2014767]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYDQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGKANACNYLRENPEIGKTIDT
KLREMLLSPALPETPESGEKSEQEEEF

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=777273 PH545_RS01230 WP_289880818.1 235103..236146(+) (recA) [Vibrio harveyi strain K2014767]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGCG
CCTTGGTGATAACCGCGCAATGGACGTAGAAACCATCTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTAGAAATCTACGGTCCAGAATCTTCAGGTAAAACAACGCTAACTCTTGAGCTTATTGCT
GCTGCGCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCAGAGCACGCGCTAGACCCTGTATACGCGAAGAAACTTGG
CGTTGATATCGACGCACTATTGGTTTCTCAGCCTGATACGGGTGAGCAAGCGCTAGAAATCTGTGACGCACTTGCACGTT
CTGGTGCTATCGACGTTATGGTTGTCGACTCAGTTGCAGCACTAACACCAAAAGCAGAAATTGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCACGTATGCTTTCTCAAGCAATGCGTAAGCTAACGGGTAACCTAAAACAGTCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACAACGACTGGTGGTAACGCAC
TTAAGTTCTACGCTTCTGTTCGTCTAGATATCCGTCGTACTGGCGCAATCAAAGAAGGTGACGAAGTAGTAGGTAACGAA
ACGCGCATCAAAGTTGTTAAGAACAAGATTGCTGCACCGTTTAAAGAAGCAAACACGCAAATCATGTACGACCAAGGTTT
CAACCGTGAAGGTGAGCTGATTGACCTAGGCGTGAAGCACAAGCTAGTTGAAAAAGCAGGTGCATGGTACAGCTACCAAG
GCGACAAGATTGGTCAAGGTAAAGCAAACGCTTGTAACTACCTACGCGAAAACCCAGAAATCGGTAAGACTATCGATACT
AAACTGCGTGAAATGCTACTTTCACCAGCACTACCTGAAACACCAGAATCAGGTGAAAAATCAGAGCAAGAAGAAGAGTT
TTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

95.137

94.813

0.902
  recA Vibrio cholerae strain A1552

95.137

94.813

0.902
  recA Acinetobacter baylyi ADP1

72.595

98.847

0.718
  recA Pseudomonas stutzeri DSM 10701

75.535

94.236

0.712
  recA Acinetobacter baumannii D1279779

74.695

94.524

0.706
  recA Glaesserella parasuis strain SC1401

67.529

100

0.677
  recA Neisseria gonorrhoeae MS11

68.405

93.948

0.643
  recA Neisseria gonorrhoeae MS11

68.405

93.948

0.643
  recA Neisseria gonorrhoeae strain FA1090

68.405

93.948

0.643
  recA Ralstonia pseudosolanacearum GMI1000

70.74

89.625

0.634
  recA Helicobacter pylori strain NCTC11637

60.588

97.983

0.594
  recA Helicobacter pylori 26695

60.294

97.983

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.323

91.931

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.507

0.579
  recA Streptococcus pneumoniae TIGR4

62.229

93.084

0.579
  recA Streptococcus pneumoniae Rx1

62.229

93.084

0.579
  recA Streptococcus pneumoniae D39

62.229

93.084

0.579
  recA Streptococcus pneumoniae R6

62.229

93.084

0.579
  recA Streptococcus mitis NCTC 12261

61.92

93.084

0.576
  recA Streptococcus mitis SK321

61.61

93.084

0.573
  recA Streptococcus mutans UA159

60.615

93.66

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

95.389

0.565
  recA Streptococcus pyogenes NZ131

60.308

93.66

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

92.507

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

58.912

95.389

0.562
  recA Lactococcus lactis subsp. cremoris KW2

59.752

93.084

0.556