Detailed information NTG0777271

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PH545_RS01215
• Genome accession: NZ_CP116414
• Coordinates: 230695..231678 (+)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain K2014767
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 225695..236678

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PH545_RS01180 (PH545_01180)	ftsB	225701..225982 (+)	282	WP_005452106.1	cell division protein FtsB	-
PH545_RS01185 (PH545_01185)	ispD	225984..226694 (+)	711	WP_289880813.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PH545_RS01190 (PH545_01190)	ispF	226709..227185 (+)	477	WP_009698769.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PH545_RS01195 (PH545_01195)	truD	227231..228274 (+)	1044	WP_038899661.1	tRNA pseudouridine(13) synthase TruD	-
PH545_RS01200 (PH545_01200)	surE	228274..229050 (+)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
PH545_RS01205 (PH545_01205)	-	229050..229676 (+)	627	WP_289880814.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PH545_RS01210 (PH545_01210)	-	229691..230614 (+)	924	WP_289880816.1	peptidoglycan DD-metalloendopeptidase family protein	-
PH545_RS01215 (PH545_01215)	rpoS	230695..231678 (+)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
PH545_RS01220 (PH545_01220)	mutS	231772..234333 (-)	2562	WP_009698766.1	DNA mismatch repair protein MutS	-
PH545_RS01225 (PH545_01225)	pncC	234419..234901 (+)	483	WP_009703950.1	nicotinamide-nucleotide amidase	-
PH545_RS01230 (PH545_01230)	recA	235103..236146 (+)	1044	WP_289880818.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=777271 PH545_RS01215 WP_005452115.1 230695..231678(+) (rpoS) [Vibrio harveyi strain K2014767]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=777271 PH545_RS01215 WP_005452115.1 230695..231678(+) (rpoS) [Vibrio harveyi strain K2014767]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACTTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAACTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856