Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PFZ59_RS02360 Genome accession   NZ_CP116393
Coordinates   461858..463009 (-) Length   383 a.a.
NCBI ID   WP_277697409.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 456858..468009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS02320 (PFZ59_02320) - 457586..457885 (-) 300 WP_004195491.1 50S ribosomal protein L23 -
  PFZ59_RS02325 (PFZ59_02325) rplD 457885..458508 (-) 624 WP_004195490.1 50S ribosomal protein L4 -
  PFZ59_RS02330 (PFZ59_02330) rplC 458533..459159 (-) 627 WP_011921686.1 50S ribosomal protein L3 -
  PFZ59_RS02335 (PFZ59_02335) rpsJ 459297..459605 (-) 309 WP_014735259.1 30S ribosomal protein S10 -
  PFZ59_RS02340 (PFZ59_02340) - 460107..460427 (-) 321 WP_002939343.1 DUF1292 domain-containing protein -
  PFZ59_RS02345 (PFZ59_02345) ruvX 460439..460858 (-) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  PFZ59_RS02350 (PFZ59_02350) - 460858..461124 (-) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  PFZ59_RS02355 (PFZ59_02355) spx 461224..461622 (-) 399 WP_002939362.1 transcriptional regulator Spx -
  PFZ59_RS02360 (PFZ59_02360) recA 461858..463009 (-) 1152 WP_277697409.1 recombinase RecA Machinery gene
  PFZ59_RS02365 (PFZ59_02365) cinA 463061..464242 (-) 1182 WP_277697410.1 competence/damage-inducible protein A Machinery gene
  PFZ59_RS02370 (PFZ59_02370) - 464279..464848 (-) 570 WP_277697411.1 DNA-3-methyladenine glycosylase I -
  PFZ59_RS02375 (PFZ59_02375) ruvA 465337..465927 (-) 591 WP_277697412.1 Holliday junction branch migration protein RuvA -
  PFZ59_RS02380 (PFZ59_02380) mutL 465966..467903 (-) 1938 WP_277697413.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40876.59 Da        Isoelectric Point: 4.8910

>NTDB_id=777082 PFZ59_RS02360 WP_277697409.1 461858..463009(-) (recA) [Streptococcus suis strain SS/UPM/MY/F001]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADGVEEVATEETPVVAEEIQDVVLDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=777082 PFZ59_RS02360 WP_277697409.1 461858..463009(-) (recA) [Streptococcus suis strain SS/UPM/MY/F001]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGTTGGATGATGC
CCTGAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGGGCTGAGCAAAAAGTTCAAGTCA
TGAGTTCAGGTAGCTTGTCAATCGACATTGCGCTTGGAGCAGGTGGTTATCCGAAAGGTCGTATCATTGAGATTTATGGT
CCAGAGAGTTCAGGTAAGACAACTGTTGCCCTTCATGCAGTAGCTCAAGCCCAGAAAGATGGCGGTATTGCTGCCTTTAT
CGATGCAGAACATGCCTTAGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTGCTCTTGTCACAGCCAG
ACTCAGGGGAGCAAGGTCTTGAAATTGCAGGTAAGTTGATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCAGTT
GCAGCCCTTGTACCTCGTGCAGAAATCGACGGTGATATCGGTGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCA
GGCTATGCGCAAACTAGGTGCATCCATCAACAAAACTAAGACGGTAGCCATTTTCATCAACCAATTACGTGAAAAAGTCG
GTGTCATGTTCGGTAACCCTGAAACAACACCTGGTGGACGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGGACAGGCGACAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAAATCGTGAAGAA
CAAGGTAGCTCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTAGCAGATAATCCAGCAATCTTTGATGAAATTGACCGAAAGATTCGTGTTCATTATGGATT
GATTGAAGCAGATGGAGTTGAAGAGGTAGCGACCGAAGAAACTCCTGTTGTTGCGGAAGAAATCCAAGATGTTGTCCTAG
ATCTTGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

86.198

100

0.864
  recA Streptococcus pyogenes NZ131

84.856

100

0.849
  recA Streptococcus pneumoniae R6

83.161

100

0.838
  recA Streptococcus pneumoniae Rx1

83.161

100

0.838
  recA Streptococcus pneumoniae D39

83.161

100

0.838
  recA Streptococcus pneumoniae TIGR4

83.161

100

0.838
  recA Streptococcus mitis NCTC 12261

83.508

99.739

0.833
  recA Streptococcus mitis SK321

82.984

99.739

0.828
  recA Lactococcus lactis subsp. cremoris KW2

75.143

91.384

0.687
  recA Latilactobacillus sakei subsp. sakei 23K

63.585

93.211

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.901

0.585
  recA Acinetobacter baumannii D1279779

60.116

90.339

0.543
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538
  recA Pseudomonas stutzeri DSM 10701

57.507

92.167

0.53
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.479

87.206

0.527
  recA Acinetobacter baylyi ADP1

61.538

84.856

0.522
  recA Vibrio cholerae strain A1552

61.538

84.856

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522
  recA Glaesserella parasuis strain SC1401

60.923

84.856

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.334

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.768

0.501
  recA Helicobacter pylori 26695

57.879

86.162

0.499
  recA Helicobacter pylori strain NCTC11637

57.879

86.162

0.499