Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   QWI19_RS20365 Genome accession   NZ_CP129123
Coordinates   3931699..3932388 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain 6D1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3926699..3937388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS20345 yxeA 3927604..3927951 (-) 348 WP_003227084.1 YxeA family protein -
  QWI19_RS20350 yxdM 3927965..3929833 (-) 1869 WP_015250856.1 ABC transporter permease YxdM -
  QWI19_RS20355 yxdL 3929808..3930581 (-) 774 WP_003243557.1 ABC transporter ATP-binding protein YxdL -
  QWI19_RS20360 yxdK 3930725..3931702 (-) 978 WP_015250855.1 two-component system sensor histidine kinase YxdK -
  QWI19_RS20365 braR 3931699..3932388 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  QWI19_RS20370 iolJ 3932497..3933369 (-) 873 WP_015250854.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  QWI19_RS20375 iolI 3933390..3934226 (-) 837 WP_015250853.1 2-keto-myo-inositol isomerase -
  QWI19_RS20380 iolH 3934312..3935181 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase family protein -
  QWI19_RS20385 iolG 3935201..3936235 (-) 1035 WP_015250851.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=777082 QWI19_RS20365 WP_003243527.1 3931699..3932388(-) (braR) [Bacillus subtilis strain 6D1]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=777082 QWI19_RS20365 WP_003243527.1 3931699..3932388(-) (braR) [Bacillus subtilis strain 6D1]
TTGAATAAAATTATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGAGAAATGGATCAGGTGATGGCGATTGAAAACGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAACTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406