Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PFZ59_RS02365 Genome accession   NZ_CP116393
Coordinates   463061..464242 (-) Length   393 a.a.
NCBI ID   WP_277697410.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 458061..469242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS02330 (PFZ59_02330) rplC 458533..459159 (-) 627 WP_011921686.1 50S ribosomal protein L3 -
  PFZ59_RS02335 (PFZ59_02335) rpsJ 459297..459605 (-) 309 WP_014735259.1 30S ribosomal protein S10 -
  PFZ59_RS02340 (PFZ59_02340) - 460107..460427 (-) 321 WP_002939343.1 DUF1292 domain-containing protein -
  PFZ59_RS02345 (PFZ59_02345) ruvX 460439..460858 (-) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  PFZ59_RS02350 (PFZ59_02350) - 460858..461124 (-) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  PFZ59_RS02355 (PFZ59_02355) spx 461224..461622 (-) 399 WP_002939362.1 transcriptional regulator Spx -
  PFZ59_RS02360 (PFZ59_02360) recA 461858..463009 (-) 1152 WP_277697409.1 recombinase RecA Machinery gene
  PFZ59_RS02365 (PFZ59_02365) cinA 463061..464242 (-) 1182 WP_277697410.1 competence/damage-inducible protein A Machinery gene
  PFZ59_RS02370 (PFZ59_02370) - 464279..464848 (-) 570 WP_277697411.1 DNA-3-methyladenine glycosylase I -
  PFZ59_RS02375 (PFZ59_02375) ruvA 465337..465927 (-) 591 WP_277697412.1 Holliday junction branch migration protein RuvA -
  PFZ59_RS02380 (PFZ59_02380) mutL 465966..467903 (-) 1938 WP_277697413.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42850.66 Da        Isoelectric Point: 4.3318

>NTDB_id=777083 PFZ59_RS02365 WP_277697410.1 463061..464242(-) (cinA) [Streptococcus suis strain SS/UPM/MY/F001]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNENRLLSVLEVASQRSDLVILCGGLGPTEDDLTKQT
LATFLGRNLVFDELAMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVAYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLSDLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEE
ILQHDKLADYFYAYGEDNSLVKTVATRLAEKRQTIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGWLSEEA
DCIRQELQADLGLAVSVLIKSESTEDNVLAKVCLTLATTSGISQKEIDLGGYSWQYLRQLACLQAWDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=777083 PFZ59_RS02365 WP_277697410.1 463061..464242(-) (cinA) [Streptococcus suis strain SS/UPM/MY/F001]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGTCAAATCGTTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAAAACAGGCTTCTGTCTGTACTGG
AAGTAGCCAGTCAGCGGAGCGACTTGGTCATTCTCTGTGGAGGACTTGGTCCAACTGAGGATGACTTGACCAAGCAGACC
TTGGCGACCTTCTTAGGTAGAAATCTTGTGTTTGATGAGTTGGCTATGGCAAAATTAGACCGTTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAAGCACAGATTGTGGAAGGAAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGTGTAGCCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTACCTTTACTGTCCCAATCTCAGCAGCAACTTTATTCGCGTGTCCTACGCTTTTTTGGAATTGG
CGAAAGCCAGTTGGTGACTGTTTTGTCGGACTTGATTGACAAGCAGACAGACCCAACTCTTGCTCCTTATGCAAAAGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAGGCAAATCTACGTTTGAATCAGTTGGAAGAAGAA
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGGAGAGGACAATAGTTTGGTCAAAACGGTAGCGACTCG
TTTGGCGGAGAAAAGACAAACCATCGCTATCGTCGAACAGGGGACAGGTGGTCTCTTGCAAGCTGAATTGAGCCTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGAGGAAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCTGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTAGGTTTGGCTGTGTCTGTGCTTATCAAATCGGAATCAACAGAGGACAA
CGTACTTGCAAAAGTATGCCTCACTTTGGCTACGACCTCGGGTATTTCCCAAAAAGAGATAGATTTAGGTGGTTATTCGT
GGCAATACCTTCGCCAGCTTGCTTGTCTGCAGGCCTGGGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

95.929

100

0.959
  cinA Streptococcus mitis SK321

56.25

100

0.595
  cinA Streptococcus mitis NCTC 12261

56.01

100

0.593
  cinA Streptococcus mutans UA159

56.691

100

0.593
  cinA Streptococcus pneumoniae TIGR4

55.769

100

0.59
  cinA Streptococcus pneumoniae Rx1

55.769

100

0.59
  cinA Streptococcus pneumoniae R6

55.769

100

0.59
  cinA Streptococcus pneumoniae D39

55.529

100

0.588
  cinA Bacillus subtilis subsp. subtilis str. 168

48.208

78.117

0.377