Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PGH26_RS05260 Genome accession   NZ_CP116341
Coordinates   1122365..1123423 (+) Length   352 a.a.
NCBI ID   WP_323692963.1    Uniprot ID   -
Organism   Sporosarcina jeotgali strain B2O-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1117365..1128423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGH26_RS05235 (PGH26_05235) - 1117669..1118403 (+) 735 WP_323692958.1 SDR family oxidoreductase -
  PGH26_RS05240 (PGH26_05240) - 1118541..1119338 (+) 798 WP_323692959.1 DUF3388 domain-containing protein -
  PGH26_RS05245 (PGH26_05245) - 1119357..1120256 (+) 900 WP_323692960.1 RodZ domain-containing protein -
  PGH26_RS05250 (PGH26_05250) pgsA 1120354..1120932 (+) 579 WP_323692961.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PGH26_RS05255 (PGH26_05255) cinA 1120948..1122198 (+) 1251 WP_323692962.1 competence/damage-inducible protein A Machinery gene
  PGH26_RS05260 (PGH26_05260) recA 1122365..1123423 (+) 1059 WP_323692963.1 recombinase RecA Machinery gene
  PGH26_RS05265 (PGH26_05265) rny 1123681..1125237 (+) 1557 WP_323692964.1 ribonuclease Y -
  PGH26_RS05270 (PGH26_05270) - 1125298..1126095 (+) 798 WP_039041982.1 TIGR00282 family metallophosphoesterase -
  PGH26_RS05275 (PGH26_05275) - 1126184..1126462 (+) 279 WP_039041983.1 stage V sporulation protein S -
  PGH26_RS05280 (PGH26_05280) miaB 1126622..1128148 (+) 1527 WP_323692965.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38104.13 Da        Isoelectric Point: 4.8244

>NTDB_id=776712 PGH26_RS05260 WP_323692963.1 1122365..1123423(+) (recA) [Sporosarcina jeotgali strain B2O-1]
MSERKAALDQALKQIEKQFGKGSVMKLGEKTDREISTSSTGSLALDSALGVGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQAAGGTAAFIDAEHALDPVYAQKLGVDIDELLLSQPDTGEQALEIAEALVRSGAVEIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAVFINQIREKVGVMFGNPEVTPGGRALKFYASVRLEVRRGEAIKHGNEIMGNKT
RIRVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDLGVEVEVVQKSGAWYSYEGERMGQGRENAKQFLKENPAIRAEISDK
IRSSYGLNSDNYVIAAHESEDEDELELFEEKE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=776712 PGH26_RS05260 WP_323692963.1 1122365..1123423(+) (recA) [Sporosarcina jeotgali strain B2O-1]
TTGAGCGAACGCAAAGCGGCTTTAGATCAAGCACTTAAACAAATAGAAAAACAGTTTGGAAAAGGCTCTGTCATGAAACT
GGGCGAGAAGACAGATAGAGAGATTTCCACATCATCGACTGGATCACTTGCACTTGACTCTGCACTTGGGGTTGGCGGAT
ATCCAAGAGGACGTGTCATTGAAATTTACGGACCAGAAAGTTCAGGTAAAACGACAGTTTCACTTCACGCAATTGCAGAA
GTTCAAGCTGCAGGAGGAACAGCTGCTTTTATTGACGCGGAGCATGCGCTGGATCCTGTCTATGCACAAAAACTTGGAGT
GGATATCGATGAGCTTCTATTATCACAGCCGGATACAGGAGAGCAGGCACTAGAAATCGCAGAAGCTCTTGTACGAAGCG
GTGCAGTTGAAATCATCGTTATTGACTCTGTTGCTGCTCTAGTACCTAAAGCGGAAATTGAAGGAGAAATGGGAGACTCC
CACGTAGGTTTACAAGCACGTTTGATGTCTCAAGCTTTACGTAAACTCTCCGGTGCTATTAACAAATCGAAAACGATTGC
TGTCTTCATCAACCAAATTCGAGAAAAAGTCGGAGTTATGTTCGGTAACCCTGAAGTCACTCCGGGTGGACGCGCACTTA
AATTCTACGCTTCTGTCAGACTTGAAGTTCGACGCGGTGAAGCGATTAAACACGGAAACGAAATCATGGGTAATAAAACT
AGAATTCGTGTTGTGAAGAACAAAGTGGCACCGCCTTTCCGTACAGCTGAAGTAGATATCATGTATGGAGAAGGTATTTC
CAAAGAAGGCGAAATCGTCGACTTAGGTGTTGAAGTGGAAGTCGTTCAGAAGAGCGGGGCGTGGTATTCTTATGAAGGTG
AGCGTATGGGACAAGGTCGTGAAAACGCGAAGCAGTTCTTAAAAGAAAACCCGGCGATTCGTGCGGAAATTTCCGATAAA
ATTCGCAGCAGTTATGGATTGAATAGTGATAATTATGTAATCGCAGCTCACGAGTCAGAGGATGAAGATGAGTTAGAGCT
ATTTGAAGAAAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.883

94.602

0.784
  recA Latilactobacillus sakei subsp. sakei 23K

73.62

92.614

0.682
  recA Streptococcus pyogenes NZ131

64.103

99.716

0.639
  recA Streptococcus mutans UA159

67.173

93.466

0.628
  recA Streptococcus pneumoniae D39

66.061

93.75

0.619
  recA Streptococcus pneumoniae TIGR4

66.061

93.75

0.619
  recA Streptococcus pneumoniae R6

66.061

93.75

0.619
  recA Streptococcus pneumoniae Rx1

66.061

93.75

0.619
  recA Lactococcus lactis subsp. cremoris KW2

64.881

95.455

0.619
  recA Ralstonia pseudosolanacearum GMI1000

66.463

93.182

0.619
  recA Streptococcus mitis NCTC 12261

65.758

93.75

0.616
  recA Streptococcus mitis SK321

65.758

93.75

0.616
  recA Vibrio cholerae strain A1552

63.081

97.727

0.616
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.081

97.727

0.616
  recA Glaesserella parasuis strain SC1401

61.538

99.716

0.614
  recA Acinetobacter baumannii D1279779

61.538

99.716

0.614
  recA Acinetobacter baylyi ADP1

62.139

98.295

0.611
  recA Pseudomonas stutzeri DSM 10701

64.024

93.182

0.597
  recA Neisseria gonorrhoeae MS11

66.032

89.489

0.591
  recA Neisseria gonorrhoeae MS11

66.032

89.489

0.591
  recA Neisseria gonorrhoeae strain FA1090

66.032

89.489

0.591
  recA Helicobacter pylori strain NCTC11637

62.385

92.898

0.58
  recA Helicobacter pylori 26695

62.08

92.898

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.462

92.33

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.429

92.614

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.133

91.761

0.543