Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PGH26_RS05255 Genome accession   NZ_CP116341
Coordinates   1120948..1122198 (+) Length   416 a.a.
NCBI ID   WP_323692962.1    Uniprot ID   -
Organism   Sporosarcina jeotgali strain B2O-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1115948..1127198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGH26_RS05230 (PGH26_05230) - 1116374..1117672 (+) 1299 WP_323692957.1 pitrilysin family protein -
  PGH26_RS05235 (PGH26_05235) - 1117669..1118403 (+) 735 WP_323692958.1 SDR family oxidoreductase -
  PGH26_RS05240 (PGH26_05240) - 1118541..1119338 (+) 798 WP_323692959.1 DUF3388 domain-containing protein -
  PGH26_RS05245 (PGH26_05245) - 1119357..1120256 (+) 900 WP_323692960.1 RodZ domain-containing protein -
  PGH26_RS05250 (PGH26_05250) pgsA 1120354..1120932 (+) 579 WP_323692961.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PGH26_RS05255 (PGH26_05255) cinA 1120948..1122198 (+) 1251 WP_323692962.1 competence/damage-inducible protein A Machinery gene
  PGH26_RS05260 (PGH26_05260) recA 1122365..1123423 (+) 1059 WP_323692963.1 recombinase RecA Machinery gene
  PGH26_RS05265 (PGH26_05265) rny 1123681..1125237 (+) 1557 WP_323692964.1 ribonuclease Y -
  PGH26_RS05270 (PGH26_05270) - 1125298..1126095 (+) 798 WP_039041982.1 TIGR00282 family metallophosphoesterase -
  PGH26_RS05275 (PGH26_05275) - 1126184..1126462 (+) 279 WP_039041983.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45136.36 Da        Isoelectric Point: 5.2174

>NTDB_id=776711 PGH26_RS05255 WP_323692962.1 1120948..1122198(+) (cinA) [Sporosarcina jeotgali strain B2O-1]
MRAEIIAVGSELLLGQITNTNAKFMSAQLADIGVDVHYQTVVGDNPARLEETIRIAEGRADLIIFSGGLGPTKDDLTKET
IARHAGVELESNKQALQSIEAYFERTGRPMTENNKKQALVLKDSVVLENRYGMAPGMAITVNEKTYMLLPGPPHEMEPMF
RDEGIPYLQRLSGSKEIIVSTVVKFFGIGEAELEHKVQDLLDSQTNPTIAPLASKDAVTLRITAKAKTAEAAHSLIEPVL
SELHNQAGEFIYGINEDTLSSKAASLLISAGLSISAAESLTAGLFTALLAEEPGISASLKGGMTVYDVQAKIEQLGLDRK
RIETYGTVSSECAEALAERIREYFHTDIGIGLTGAAGPDTHDGKPAGTVWIGLAFKDRTKSYQLRLSGSRNTNRLRAANF
ALYYLIRELETIKSQN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=776711 PGH26_RS05255 WP_323692962.1 1120948..1122198(+) (cinA) [Sporosarcina jeotgali strain B2O-1]
ATGCGAGCAGAAATCATAGCAGTTGGATCCGAGTTATTGCTCGGTCAAATAACCAATACAAATGCAAAATTCATGTCTGC
ACAACTTGCTGATATCGGAGTGGATGTACATTATCAAACAGTCGTTGGAGATAATCCGGCGCGGTTGGAAGAAACAATTC
GAATTGCTGAGGGCAGAGCAGATCTAATCATCTTCTCAGGCGGATTAGGACCGACTAAAGATGATTTAACAAAAGAGACC
ATAGCACGGCATGCAGGGGTTGAGCTAGAATCCAACAAACAGGCATTGCAGTCGATCGAAGCGTATTTTGAACGTACGGG
CAGACCAATGACTGAAAACAATAAAAAGCAGGCGCTCGTTTTGAAAGATTCTGTTGTGCTGGAAAATCGATATGGGATGG
CCCCTGGAATGGCAATTACGGTGAATGAAAAAACCTATATGCTATTGCCAGGACCTCCGCATGAAATGGAGCCGATGTTC
CGAGACGAGGGAATCCCATATTTACAGCGACTGTCAGGCAGTAAGGAAATTATTGTTTCGACTGTTGTAAAGTTTTTTGG
AATTGGAGAAGCAGAACTTGAGCATAAAGTGCAAGACTTGTTGGATTCTCAAACCAACCCGACCATTGCGCCTTTAGCTT
CAAAAGATGCGGTGACACTTCGGATAACTGCCAAAGCTAAAACGGCTGAAGCTGCACACAGTTTAATTGAGCCGGTTCTA
TCTGAACTGCATAACCAAGCTGGAGAATTTATTTATGGAATAAATGAAGATACGCTGTCCTCCAAAGCGGCATCATTACT
AATCAGTGCAGGTCTATCAATTTCAGCAGCAGAAAGTTTAACCGCGGGACTTTTCACTGCATTGCTTGCGGAAGAACCTG
GTATTAGTGCCTCTTTAAAAGGCGGTATGACAGTTTATGATGTACAAGCTAAAATAGAGCAGCTTGGATTAGATAGAAAA
CGAATCGAAACTTACGGTACGGTTAGCTCTGAATGTGCGGAAGCATTAGCAGAAAGAATCCGTGAATATTTCCATACAGA
TATCGGAATCGGGTTAACTGGCGCCGCTGGACCGGATACACATGATGGAAAACCTGCGGGAACGGTTTGGATAGGTCTCG
CCTTCAAAGATAGAACGAAATCGTATCAGCTTCGGTTATCTGGATCCCGTAACACCAATCGTTTGCGTGCAGCGAACTTC
GCTTTATATTATCTCATTCGCGAGCTGGAAACGATAAAGAGTCAAAATTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

49.633

98.317

0.488
  cinA Streptococcus mitis SK321

42.993

100

0.435
  cinA Streptococcus mitis NCTC 12261

42.518

100

0.43
  cinA Streptococcus pneumoniae TIGR4

42.243

100

0.425
  cinA Streptococcus mutans UA159

41.928

99.76

0.418
  cinA Streptococcus pneumoniae Rx1

41.487

100

0.416
  cinA Streptococcus pneumoniae R6

41.487

100

0.416
  cinA Streptococcus pneumoniae D39

41.247

100

0.413