Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PGN40_RS15010 Genome accession   NZ_CP115914
Coordinates   3034442..3035479 (-) Length   345 a.a.
NCBI ID   WP_040056631.1    Uniprot ID   -
Organism   Priestia filamentosa strain AZC66     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3029442..3040479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGN40_RS14990 (PGN40_14990) - 3030055..3030978 (-) 924 WP_046217787.1 dipeptidase -
  PGN40_RS14995 (PGN40_14995) spoVS 3031088..3031348 (-) 261 WP_019391885.1 stage V sporulation protein SpoVS -
  PGN40_RS15000 (PGN40_15000) - 3031526..3032320 (-) 795 WP_019391884.1 TIGR00282 family metallophosphoesterase -
  PGN40_RS15005 (PGN40_15005) rny 3032413..3033972 (-) 1560 WP_019391883.1 ribonuclease Y -
  PGN40_RS15010 (PGN40_15010) recA 3034442..3035479 (-) 1038 WP_040056631.1 recombinase RecA Machinery gene
  PGN40_RS15015 (PGN40_15015) cinA 3035686..3036927 (-) 1242 WP_040056632.1 competence/damage-inducible protein A Machinery gene
  PGN40_RS15020 (PGN40_15020) pgsA 3036995..3037573 (-) 579 WP_019391880.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PGN40_RS15025 (PGN40_15025) - 3037623..3038579 (-) 957 WP_240516643.1 helix-turn-helix domain-containing protein -
  PGN40_RS15030 (PGN40_15030) - 3038592..3039383 (-) 792 WP_019391878.1 YmfK family protein -
  PGN40_RS15035 (PGN40_15035) - 3039547..3039807 (-) 261 WP_040056634.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37548.56 Da        Isoelectric Point: 4.9334

>NTDB_id=774380 PGN40_RS15010 WP_040056631.1 3034442..3035479(-) (recA) [Priestia filamentosa strain AZC66]
MSDRQAALDMALKQIEKQFGKGSIMKLGEDTERKISSVPSGSLALDVALGIGGYPRGRIVEVYGPESSGKTTFALHAIAE
VQAEGGQAAFIDAEHALDPVYARNLGVKVDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIALFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEIRRAEQLKQGNDVVGNKT
RVKVVKNKVAPPFRTAEVDIMYGEGVSREGELLDIGSELDIVQKSGAWYSYNEERLGQGRENAKQFLKENKEIAAEIRSQ
IRLHHGLDEEMAQQAEEQERVEVPE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=774380 PGN40_RS15010 WP_040056631.1 3034442..3035479(-) (recA) [Priestia filamentosa strain AZC66]
TTGAGCGATCGTCAAGCTGCGTTAGATATGGCTTTAAAGCAAATTGAGAAACAGTTTGGTAAAGGTTCTATTATGAAATT
AGGAGAAGACACTGAACGTAAGATTTCCAGCGTTCCAAGTGGTTCACTTGCACTGGATGTGGCGCTTGGAATAGGTGGAT
ATCCACGCGGACGTATTGTAGAAGTATATGGCCCAGAAAGCTCTGGTAAAACAACGTTTGCTCTACATGCAATTGCAGAA
GTACAAGCGGAAGGTGGACAAGCTGCTTTCATCGATGCAGAGCATGCTCTTGATCCAGTTTATGCAAGAAACCTAGGTGT
AAAAGTAGATGAACTTCTTTTATCACAGCCAGATACAGGTGAGCAAGCGTTAGAAATCGCAGAAGCTCTTGTACGAAGCG
GTGCTGTGGATATTGTTGTTGTCGACTCTGTTGCAGCTCTTGTACCAAAAGCAGAGATTGAAGGGGAAATGGGTGACTCA
CACGTTGGTTTACAAGCTCGTCTTATGTCACAAGCTCTTCGTAAGCTTTCAGGTGCAATCAACAAGTCTAACACAATTGC
TTTGTTCATCAACCAAATTCGTGAAAAAGTGGGCGTAATGTTCGGTAACCCAGAAACAACTCCTGGTGGACGCGCGCTTA
AATTCTATTCTTCTGTTCGTCTTGAAATTCGTCGTGCAGAACAGCTTAAGCAAGGTAACGACGTTGTCGGAAACAAAACA
AGAGTTAAAGTTGTAAAAAATAAAGTAGCACCACCATTCCGTACAGCTGAAGTAGATATTATGTATGGAGAAGGTGTGTC
TAGAGAAGGCGAACTTTTAGATATCGGTTCTGAACTTGATATCGTTCAAAAAAGCGGTGCTTGGTACTCTTACAACGAAG
AACGTCTTGGACAAGGTCGCGAGAATGCGAAACAGTTCTTGAAAGAAAATAAAGAGATTGCTGCTGAGATTCGTAGCCAA
ATTCGTCTTCACCATGGTTTAGATGAAGAAATGGCCCAACAGGCAGAAGAACAAGAAAGAGTAGAAGTTCCAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.415

95.072

0.841
  recA Latilactobacillus sakei subsp. sakei 23K

71.176

98.551

0.701
  recA Streptococcus pneumoniae D39

66.859

100

0.672
  recA Streptococcus mitis SK321

66.859

100

0.672
  recA Streptococcus pneumoniae Rx1

66.859

100

0.672
  recA Streptococcus pneumoniae R6

66.859

100

0.672
  recA Streptococcus pneumoniae TIGR4

66.859

100

0.672
  recA Streptococcus mitis NCTC 12261

67.055

99.42

0.667
  recA Streptococcus mutans UA159

68.373

96.232

0.658
  recA Neisseria gonorrhoeae MS11

65.698

99.71

0.655
  recA Neisseria gonorrhoeae strain FA1090

65.698

99.71

0.655
  recA Neisseria gonorrhoeae MS11

65.698

99.71

0.655
  recA Streptococcus pyogenes NZ131

67.683

95.072

0.643
  recA Lactococcus lactis subsp. cremoris KW2

65.875

97.681

0.643
  recA Ralstonia pseudosolanacearum GMI1000

69.01

90.725

0.626
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.905

97.971

0.626
  recA Glaesserella parasuis strain SC1401

66.458

92.464

0.614
  recA Helicobacter pylori 26695

62.798

97.391

0.612
  recA Acinetobacter baylyi ADP1

62.059

98.551

0.612
  recA Vibrio cholerae strain A1552

65.625

92.754

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.625

92.754

0.609
  recA Helicobacter pylori strain NCTC11637

62.5

97.391

0.609
  recA Pseudomonas stutzeri DSM 10701

65

92.754

0.603
  recA Acinetobacter baumannii D1279779

64.062

92.754

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.577

94.493

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

92.754

0.562